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Microbial in Biological News

Reviews of microbial gene language published in special issue of Trends in Microbiology

Blacksburg, Va. -- Ten articles describing how a universal language to describe genes is bringing benefits to the study of the microbial world have been published in a special issue of Trends in Microbiology , co-edited by Virginia Bioinformatics Institute professor Brett Tyler. The Gene Ontology...

Exploring standards to advance microbial genomics

WALNUT CREEK, CA -- Microbes contribute to manifold human endeavors ranging from bioenergy to agriculture to medicine. Moreover, they make the Earth's biogeochemical cycles go round, a prerequisite for all life on the planet. Exceedingly numerous, they are also extremely diverse, encompassing most...

MIT reels in RNA surprise with microbial ocean catch

CAMBRIDGE, Mass.--An ingenious new method of obtaining marine microbe samples while preserving the microbes' natural gene expression has yielded an unexpected boon: the presence of many varieties of small RNAs snippets of RNA that act as switches to regulate gene expression in these single-celled...

Illinois Soil Nitrogen Test measures microbial nitrogen

MADISON, WI, May 4, 2009--Contrary to the prevailing view, cereal crops derive the majority of their nitrogen from the soil, not fertilizer. Soils differ considerably in microbial activities that determine nitrogen-supplying power, and these differences must be taken into account if nitrogen ferti...

Earth's highest known microbial systems fueled by volcanic gases

Gases rising from deep within the Earth are fueling the world's highest-known microbial ecosystems, which have been detected near the rim of the 19,850-foot-high Socompa volcano in the Andes by a University of Colorado at Boulder research team. The new study shows the emission of water, carbon...

Unusual microbial ropes grow slowly in cave lake

Deep inside the Frasassi cave system in Italy and more than 1,600 feet below the Earth's surface, divers found filamentous ropes of microbes growing in the cold water, according to a team of Penn State researchers. "Sulfur caves are a microbiology paradise. Many different types of organisms live...

When under attack, plants can signal microbial friends for help

Researchers at the University of Delaware have discovered that when the leaf of a plant is under attack by a pathogen, it can send out an S.O.S. to the roots for help, and the roots will respond by secreting an acid that brings beneficial bacteria to the rescue. The finding quashes the misperce...

DOE JGI extends the capabilities of the Integrated Microbial Genome System

WALNUT CREEK, Calif. The U.S. Department of Energy Joint Genome Institute (DOE JGI) has extended the capabilities of the Integrated Microbial Genomes (IMG) data management system, updated the content of the IMG/M metagenome data management and analysis system, and has launched its educational comp...

'Barren' seafloor teeming with microbial life

Once considered a barren plain with the odd hydrothermal vent, the seafloor appears to be teeming with microbial life, according to a paper being published May 29 in Nature. A 60,000 kilometer seam of basalt is exposed along the mid-ocean ridge spreading system, representing potentially the lar...

Undergraduates develop 'dirt-powered' microbial fuel cells to light Africa

CAMBRIDGE, Mass. May 14, 2008 A team composed of Harvard students and alumni was among the winners of the World Banks Lighting Africa 2008 Development Marketplace competition, held in Accra, Ghana from May 6 to 8, 2008. The innovation, microbial fuel cell-based lighting systems suitable for Sub-...

Expanded histology methods book covers processing of animal, plant, and microbial tissues

COLD SPRING HARBOR, N.Y. For more than 25 years, the book Histological and Histochemical Methods has served as an established resource for researchers, students, and technologists in the biological and biomedical sciences who need to process normal or diseased tissues for microscopic analysis...

Climate changing gas from some surprising microbial liaisons

The climate changing gas dimethyl sulphide (DMS) is being made by microbes at the rate of more than 200 million tonnes a year in the worlds seas, scientists heard today (Tuesday 1 April 2008) at the Society for General Microbiologys 162nd meeting being held this week at the Edinburgh International...

Gene's 'selective signature' aids detection of natural selection in microbial evolution

Scientists at MIT have come up with a mathematical approach for analyzing a protein simultaneously in a set of ecologically distinct species to identify occurrences of natural selection in an organisms evolution. The new method determines the selective signature of a gene, that is, the pattern...

Bioinformatics technology developed at Argonne provides new insight into microbial activities

ARGONNE, Ill. (March 14, 2008) -- Scientists may gain a new insight into the relationship between viruses and their environments thanks to a new computational technology developed by researchers at the U.S. Department of Energys (DOE) Argonne National Laboratory. This technology has already been...

Latest Integrated Microbial Genomes data management system update release

WALNUT CREEK, CA--Version 2.4 of the Integrated Microbial Genomes (IMG) data management system, a resource provided to the scientific community for microbial genome data analysis, has now been released. Hosted by the U.S. Department of Energy Joint Genome Institute (DOE JGI), IMG has built a popul...

Hydrothermal vents: Hot spots of microbial diversity

MBL, WOODS HOLE, MAThousands of new kinds of marine microbes have been discovered at two deep-sea hydrothermal vents off the Oregon coast by scientists at the MBL (Marine Biological Laboratory) and University of Washingtons Joint Institute for the Study of Atmosphere and Ocean. Their findings, pub...

Mine runoff continues to provide clues to microbial diversification

Pink slime at the surface of water trickling through an old mine in California is proving to be a treasure for researchers in their quest to learn more about how bacterial communities exist in nature. A letter published in today’s online edition of Nature shows that it is possible to follow what ...

Different strategies underlie the ecology of microbial invasions

Infectious disease can play a key role in mediating the outcome of competition between rival groups, as seen in the effects of disease-bearing conquistadors in the New World--or, on a much smaller ecological scale, the ability of bacteria to spread their viruses to competing bacteria. In a new stud...

DOE JGI finishes 100th microbial genome

Microbes, thriving in even the world's most extreme environments, are capable of performing myriad biological functions, learned over the billions of years they have inhabited the planet. Those lessons, and how they can be captured to render clean renewable sources of energy and to repair damaged ...

Virginia Bioinformatics Institutes launches microbial database

Researchers at the Virginia Bioinformatics Institute at Virginia Tech have launched a publicly-available microbial database to host a range of microbial genome sequences. The VBI Microbial Database (VMD), which is described in a recent article published in Nucleic Acids Research (Vol.34, D379-D38...

Earth Rx: A microbial biotechnology prescription for global environmental health

Water. Waste. Energy. This trio of problems is among the greatest challenges to the environmental health of society. Water purification alone is becoming more problematic in the world due to our increasingly reliance on contaminated sources, such as polluted rivers, lakes and groundwater. "Al...

UC San Diego partners with Venter Institute to build marine microbial genomics cyberinfrastructure

Researchers at the University of California, San Diego (UCSD) will build a state-of-the-art computational resource and develop software tools to decipher the genetic code of communities of microbial life in the world's oceans. The new resource will help scientists understand how microbes functio...

Patterns in genome organization may partially explain how microbial cells work

The location of a piece of real estate may be its most important feature to many Realtors, and bioengineering researchers at the University of California, San Diego (UCSD) and the University of Virginia have reported that the location of genes and other features distributed along the chromosomes of...

Poison + water = hydrogen. New microbial genome shows how

Take a pot of scalding water, remove all the oxygen, mix in a bit of poisonous carbon monoxide, and add a pinch of hydrogen gas. It sounds like a recipe for a witch's brew. It may be, but it is also the preferred environment for a microbe known as Carboxydothermus hydrogenoformans . In a pap...

DOE JGI launches IMG public online microbial genome data clearinghouse

As the microbial world comes to light through DNA sequencing, the new Integrated Microbial Genomes (IMG) data management system of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) will deliver valuable information for the benefit of the global research community. "The IMG system ...

AGU journal highlights -- Aug. 6, 2009

...thane is a strong greenhouse gas, as is nitrous oxide, which has about 300 times carbon dioxide's warming potential. Both are produced in the ocean by microbial activity. Although more than 30 years old, assessments of the rate of methane emitted by the ocean are included in the Intergovernmental Panel on Clim...

Wastewater produces electricity and desalinates water

...t of electricity to desalinate water and using the microbial desalination cells, we could actually desalinate w...ntal Engineering, Penn State The team modified a microbial fuel cell -- a device that uses naturally occurrin...timized, but it is proof of concept." A typical microbial fuel cell consists of two chambers, one filled wit...

Microbes and their hosts -- exploring the complexity of symbiosis in DNA and cell biology

..., or mammals, provides a fascinating view into how microbial symbionts adapt to changing biological environment...ge of scientific topics and disciplines related to microbial symbiosis. These include "The Oral microbial Consortium's Interaction with the Periodontal Inna...

University of Minnesota research leads to new technology to protect human health

...t, who is a Distinguished McKnight University Professor in the College of Biological Sciences. "Larry Wackett's research has revealed the power of microbial enzymes to modify and destroy toxic substances in the environment," says Joe Krebs, director of Protein Chemistry and Engineering at Bioo Scientific. ...

Life on Earth came from other planets

... to Dr. Joseph, the planets which orbited the parent star may have harbored microbial life. When the parent star became a red giant, its solar winds blew away pl...hich bombarded the Earth and this is how life on our planet began. In fact, microbial fossils have been discovered in fifteen meteors (carbonaceous chondrites), ...

C. difficile spores spread superbug

...ost to. When the team treated mice with antibiotics, the balance of the microbial ecosystem was disrupted. Because C. difficile is resistant to many antibi...transmission are so far poorly understood," says Brendan Wren, Professor of microbial Pathogenesis from the London School of Hygiene & Tropical Medicine's Depart...

The right messenger for a healthy immune response

... the infection occurs. Scientists call this behaviour "priming". A healthy basal level of Beta-Interferon facilitates a faster immune reaction against microbial and viral threads. Researchers from the HZI have now managed to show why this is the case: Beta-Interferon is a key regulator and of vital importa...

University of Hawaii at Manoa professor published in science journal

... fall: sulfate, reduction, sulfide efflux and methanogenesis." The research by Smith and collaborators is the first detailed study of microbial processes at a deep-sea whale fall. The work evaluated the biogeochemical effects of a 30-ton whale carcass deployed at 1,675 mile depth for seven yea...

Plant protein 'doorkeepers' block invading microbes, study finds

...ty as they are exposed to various microbes, plants make use of certain built-in cells and genetically programmed systems to protect themselves against microbial invasion and related diseases. This type of innate immune system has two branches: one makes use of receptor proteins outside the cell to recogniz...

The tiny difference in the genes of bacteria

...nic bacteria evolve in the environment. "Hereby, this high resolution method makes an important contribution towards a fast and precise recognition of microbial pathogens with pandemic potential." ...

The tiny difference in the genes of bacteria

...nic bacteria evolve in the environment. "Hereby, this high resolution method makes an important contribution towards a fast and precise recognition of microbial pathogens with pandemic potential." ...

Plant protein 'doorkeepers' block invading microbes, study finds

...ty as they are exposed to various microbes, plants make use of certain built-in cells and genetically programmed systems to protect themselves against microbial invasion and related diseases. This type of innate immune system has two branches: one makes use of receptor proteins outside the cell to recogniz...

NYU Langone Medical Center awarded NIH grants totaling $1,560,000

...an $115 million in research grants during the project to sequence up to 600 microbial genomes and for selected demonstration projects that will examine the relat... whether individuals share a core microbiome, and to examine how changes in microbial populations correlate with changes in human health. ...

NIH expands Human Microbiome Project; funds sequencing centers and disease projects

...enters will work together to sequence at least 400 microbial genomes. Another approximately 500 microbial genomes are already completed or in sequencing pip.... These data will then be used to characterize the microbial communities found in samples taken from healthy hu...

Phthalic symbol

...f carbon for the microbes. Successive divisions of microbial cells quickly leads to the evolution of a strain t...hthalate and convert it into the raw materials for microbial growth and reproduction. The researchers then t...am per liter within two days of treatment with the microbial honeycomb. The team points out that the rate of...
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