Tag: "curated" at biology news

Agilent Technologies releases automated literature search tool for biology researchers

...ta, scientific knowledge from published papers and curated biological network databases. This shared, multi-disciplinary knowledge provides a more comprehensive view of disease. Availability Cytoscape 2.1 is free open-source software. The Agilent Literature Search tool is currently available as a free but ...

Software Tool for Converting Scientific Text into a Database of Functional Relationships

...enomics. "Data extracted with MedScan and manually curated data are normally of compatible quality, but the efficiency is incomparable, and it is easy to verify and replicate the results of MedScan work." The new version of MedScan adds flexibility on the level of entity recognition and information extracti...

Building a protein name dictionary from full text: a machine learning term extraction approach

...lexicons of biological names, often extracted from curated gene or protein databases. This is a limitation, because such databases have low coverage of the many name variants which are used to refer to biological entities in the literature. Results We present an approach to recognize named entities in full ...

DOE JGI releases IMG 1.5 with curated archaeal genomes

...oal, IMG 1.5 now contains 22 archaeal genomes with curated gene models and detailed documentation of the meth...xamination of gene model changes by comparing each curated gene model with the original. IMG 1.5 extensions include the addition of IMG terms (which are cur...

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