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Isis Reports Financial Results and Highlights for Second Quarter 2011

CARLSBAD, Calif., Aug. 4, 2011 /PRNewswire/ -- Isis Pharmaceuticals, Inc. (Nasdaq: ISIS) today announced its financial results for the quarter ended June 30, 2011.  The Company finished the second quarter of 2011 with a pro forma net operating loss (NOL) of $11.6 million and $24.9 million for the three and six months ended June 30, 2011, respectively, compared to a pro forma NOL of $15.5 million and $17.1 million for the same periods in 2010.  The Company finished the second quarter of 2011 with more than $395 million in cash.  Isis remains on track to meet its 2011 guidance of an NOL in the low $40 million range and a year-end cash balance of more than $350 million.

"We were pleased to announce last week that Genzyme submitted the mipomersen marketing application to the European Medicines Agency and remains on track to submit the US application for marketing approval later this year.  Pending regulatory approval, mipomersen will be marketed under the brand name Kynamro™.  The Kynamro European regulatory submission is a significant achievement and brings this potentially life-changing drug closer to patients who are at great risk of dying from their cardiovascular disease.  We continue to work closely with Genzyme to complete all the steps necessary for a successful approval and launch planned in 2012," said B. Lynne Parshall, COO and CFO of Isis.  "We believe the initial commercial opportunities for Kynamro are significant and could provide us with the opportunity to earn significant commercial revenue."  

Upcoming Key Milestones

  • File for marketing approval for Kynamro™ (mipomersen) in the United States in the fourth quarter of 2011 for patients with homozygous Familial Hypercholesterolemia (FH).
  • Initiate Phase 2 studies on ISIS-CRPRx in patients with Rheumatoid Arthritis and Multiple Myeloma.

  • Financial ResultsOn a GAAP basis, Isis reported a loss from operations of $14.1 million and $30.2 million for the three and six months ended June 30, 2011, respectively, compared to $18.7 million and $23.6 million for the same periods in 2010.All pro forma amounts referred to in this press release exclude non-cash stock compensation.  Please refer to the reconciliation of pro forma and GAAP measures, which is provided later in this release.

    RevenueRevenue for the three and six months ended June 30, 2011 was $24.8 million and $46.0 million, respectively, compared to $23.5 million and $53.4 million for the same periods in 2010.  Isis' revenue fluctuates based on the nature and timing of payments under agreements with the Company's partners, including license fees, milestone-related payments and other payments.  For example, in the first half of 2011 Isis recognized as revenue a $5 million milestone payment Isis earned from GlaxoSmithKline (GSK) for the initiation of a Phase 1 study for ISIS-TTRRx.  However, revenue in the first half of 2011 included less revenue from Bristol-Myers Squibb and Alnylam Pharmaceuticals compared to the first half of 2010, primarily because amortization of upfront fees from these collaborations ended in 2010, although Isis continues to receive research support from Bristol-Myers Squibb.  In the second quarter of 2010, Isis earned $1.9 million from Regulus related to its strategic alliance with Sanofi, which also contributed to lower revenue in the first half of 2011.

    Operating ExpensesOn a pro forma basis, operating expenses for the three and six months ended June 30, 2011 were $36.4 million and $70.9 million, respectively, compared to $39.0 million and $70.5 million for the same periods in 2010.   Isis' operating expenses in the first half of 2011 reflected higher costs associated with Isis' maturing pipeline of drugs offset by lower costs associated with the completion of the mipomersen Phase 3 program that supports the initial regulatory filings. Although Isis' operating expenses were essentially flat compared to 2010, as drugs move forward to more advanced stages of development, including into larger, longer clinical studies, the costs of development will increase.  On a GAAP basis, Isis' operating expenses for the three and six months ended June 30, 2011 were $38.9 million and $76.1 million, respectively, compared to $42.2 million and $77.0 million for the same periods in 2010.  

    Net Loss Isis reported a net loss of $17.9 million and $37.9 million for the three and six months ended June 30, 2011, respectively, compared to $25.2 million and $34.8 million for the same periods in 2010.  Basic and diluted net loss per share for the three and six months ended June 30, 2011 was $0.18 per share and $0.38 per share, respectively, compared to $0.25 per share and $0.35 per share for the same periods in 2010.  Isis' net loss for the second quarter of 2011 decreased compared to the same period in 2010 primarily due to a decrease in Isis' operating expenses and its share of Regulus' net loss, which reflects additional revenue Regulus earned from its alliance with Sanofi.  In the first half of 2011 Isis' net loss increased compared to the same period in 2010 primarily due to a decrease in Isis' revenue offset in part by a decrease in Isis' share of Regulus' net loss as described above.  

    Balance SheetAs of June 30, 2011, Isis had cash, cash equivalents and short-term investments of $395.2 million compared to $472.4 million at December 31, 2010 and had working capital of $318.7 million at June 30, 2011 compared to $377.2 million at December 31, 2010.  The decrease in cash and working capital primarily relates to cash used to fund Isis' operations.  

    Isis' leases on its primary research and development facilities expire at the end of 2011. Rather than invest in costly renovations to its existing facilities, the Company chose to consolidate the majority of its operations in a new leased facility that Biomed Realty Trust, Inc. (BMR) constructed. To make the Company's move, scheduled for August 2011, as efficient as possible, Isis requested access to the new facility prior to the completion of construction.  To gain early access, Isis agreed to modify its lease to accept additional responsibility.  As a result, accounting rules required Isis to record the cost of the facility as a fixed asset with a corresponding liability.  Beginning in the third quarter, Isis will depreciate the building over its economic life and Isis' rent payments, which begin on January 1, 2012, will decrease the liability over the term of the lease.

    Business Highlights "The most significant events for Isis this year are the submission of regulatory filings for Kynamro in both Europe and the United States.  With the European submission, we are one step closer to commercialization.  Together with Genzyme, we have put together a comprehensive package for these filings that includes data from more than 700 mipomersen-treated patients, including a significant number of patients with long-term drug exposure.  In all clinical studies conducted, including four Phase 3 studies, we observed an efficacy and safety profile for mipomersen that we believe supports our initial market opportunities.  With longer-term dosing, LDL-C reductions are sustained with a safety profile that is consistent with our Phase 3 experience," continued Ms. Parshall. "In addition, together with Genzyme, we are making progress toward initiating additional studies to provide additional patient exposure to support future regulatory filings."

    "Already 2011 has been a very successful year, but we have many more events to look forward to as we continue to make significant progress in our pipeline.  We anticipate reporting Phase 1 data on several drugs that could provide early evidence of clinical activity supporting disease opportunities that represent very large commercial opportunities.  We will also continue to add drugs to our pipeline this year.  In short, we are maturing the pipeline as we move important drugs toward the market and expanding our pipeline with the addition of novel drugs in new disease areas.  All of these activities are setting the stage for what we hope will be a very exciting 2012," concluded Ms. Parshall.

    Corporate and Drug Development Highlights

  • Genzyme submitted a marketing application for mipomersen in Europe for patients with homozygous FH and severe heterozygous FH.
  • Genzyme announced the brand name, Kynamro, that mipomersen will be marketed under if the necessary approvals are granted.
  • Data from two Phase 3 studies of mipomersen was presented at the 79th European Atherosclerosis Society Congress.  The data highlight the potential of mipomersen in lowering Lp(a) and potentially reducing the necessity for lipid-apheresis.
  • Isis initiated Phase 1 studies on ISIS-PTP1BRx and ISIS-TTRRx, the first drug selected as part of its collaboration with GSK.  Upon Phase 1 initiation, Isis earned a $5 million milestone payment from GSK.
  • Isis and GSK expanded their collaboration by initiating a sixth program to discover and develop drugs to treat rare and infectious diseases and Isis received a $3 million payment from GSK.
  • The Isis and GSK collaboration was awarded the Breakthrough Alliance Award of 2011 as the breakthrough deal of 2010.

  • Conference CallAt 4:30 p.m. Eastern Time today, August 4, Isis will conduct a live webcast conference call to discuss the earnings release and related activities.  Interested parties my listen to the call by dialing 866-543-6407 and refer to passcode "ISIS 2011", or access the webcast at  A webcast replay will be available for a limited time at the same address.

    About Isis Pharmaceuticals, Inc.Isis is exploiting its leadership position in antisense technology to discover and develop novel drugs for its product pipeline and for its partners.  Isis' broad pipeline consists of 24 drugs to treat a wide variety of diseases with an emphasis on cardiovascular, metabolic and severe and rare/neurodegenerative diseases, and cancer.  Isis' partner, Genzyme, plans to commercialize Isis' lead product, mipomersen, following regulatory approval, which is expected in 2012.  Isis' patents provide strong and extensive protection for its drugs and technology.  Additional information about Isis is available at

    Forward-Looking StatementsThis press release includes forward-looking statements regarding Isis Pharmaceuticals' financial position and outlook, Isis' business, the planned commercialization of mipomersen, and the therapeutic and commercial potential of Isis' technologies and products in development, including the business of Regulus, Isis' jointly owned subsidiary. Any statement describing Isis' goals, expectations, financial or other projections, intentions or beliefs is a forward-looking statement and should be considered an at-risk statement.  Such statements are subject to certain risks and uncertainties, particularly those inherent in the process of discovering, developing and commercializing drugs that are safe and effective for use as human therapeutics, and in the endeavor of building a business around such drugs.  Isis' forward-looking statements also involve assumptions that, if they never materialize or prove correct, could cause its results to differ materially from those expressed or implied by such forward-looking statements.  Although Isis' forward-looking statements reflect the good faith judgment of its management, these statements are based only on facts and factors currently known by Isis.  As a result, you are cautioned not to rely on these forward-looking statements.  These and other risks concerning Isis' programs are described in additional detail in Isis' annual report on Form 10-K for the year ended December 31, 2010 and its most recent quarterly report on Form 10-Q, which are on file with the SEC. Copies of these and other documents are available from the Company.

    In this press release, unless the context requires otherwise, "Isis," "Company," "we," "our," and "us" refers to Isis Pharmaceuticals and its subsidiaries, including Regulus Therapeutics Inc., its jointly owned subsidiary.

    Isis Pharmaceuticals is a registered trademark of Isis Pharmaceuticals, Inc.  Regulus Therapeutics is a trademark of Regulus Therapeutics Inc.  Kynamro™ is a trademark of Genzyme Corporation.ISIS PHARMACEUTICALS, INC.SELECTED FINANCIAL INFORMATIONCondensed Consolidated Statements of Operations(In Thousands, Except Per Share Data)Three months ended,Six months ended,June 30,June 30,2011201020112010Revenue:(unaudited)(unaudited)Research and development revenue under collaborative agreements$24,305$21,143$44,319$49,699Licensing and royalty revenue5182,3601,6513,730Total revenue24,82323,50345,97053,429Expenses:Research and development 36,00939,12470,25471,111General and administrative 2,8743,0515,8845,869Total operating expenses38,88342,17576,13876,980Loss from operations(14,060)(18,672)(30,168)(23,551)Other income (expense):Equity in net loss of Regulus Therapeutics Inc.(1,033)(3,942)(1,889)(5,428)Investment income6168591,3211,814Interest expense(3,437)(3,261)(6,851)(6,498)Gain (loss) on investments, net34(136)(285)(1,146)Loss before income tax expense (17,880)(25,152)(37,872)(34,809)Income tax expense(9)(2)(11)(2)Net loss $(17,889)$(25,154)$(37,883)$(34,811)Basic and diluted net loss per share$(0.18 )$(0.25)$(0.38 )$(0.35)Shares used in computing basic and diluted net loss per share99,60299,09199,58699,052Isis Pharmaceuticals, Inc.Reconciliation of GAAP to Pro Forma Basis:  Condensed Consolidated Operating Expenses and Loss From Operations (In Thousands)Three months ended,

    June 30,Six months ended,

    June 30, 2011201020112010(unaudited)(unaudited)As reported operating expenses according to GAAP$38,883$42,175$76,138$76,980Excluding compensation expense related to stock options(2,500)(3,132)(5,232)(6,488)Pro forma operating expenses$36,383$39,043$70,906$70,492As reported loss from operations according to GAAP$(14,060)$(18,672)$(30,168)$(23,551)Excluding compensation expense related to stock options (2,500)(3,132)(5,232)(6,488)Pro forma loss from operations$(11,560)$(15,540)$(24,936)$(17,063)Reconciliation of GAAP to Pro Forma BasisAs illustrated in the Selected Financial Information in this press release, pro forma operating expenses and pro forma loss from operations were adjusted from GAAP to exclude compensation expense related to stock options, which are non-cash.  Isis has regularly reported non-GAAP measures for operating expenses and loss from operations as pro forma results.  These measures are provided as supplementary information and are not a substitute for financial measures calculated in accordance with GAAP.  Isis reports these pro forma results to better enable financial statement users to assess and compare its historical performance and project its future operating results and cash flows.  Further, the presentation of Isis' pro forma results is consistent with how Isis' management internally evaluates the performance of its operations. Isis Pharmaceuticals, Inc.Condensed Consolidated Balance Sheets(In Thousands)June 30,December 31,20112010(unaudited)Assets:  Cash, cash equivalents and short-term investments$395,184$472,353  Other current assets15,53610,784  Property, plant and equipment, net88,01035,703  Other assets30,84231,637Total assets$529,572$550,477Liabilities and stockholders' equity:  Other current liabilities$23,261$31,388  Current portion of deferred contract revenue68,71974,502  2 5/8% convertible subordinated notes137,073132,895  Long-term obligations, less current portion64,18715,867  Investment in Regulus Therapeutics Inc.2,759870  Long-term deferred contract revenue21,35650,413  Stockholders' equity212,217244,542Total liabilities and stockholders' equity$529,572$550,477

    SOURCE Isis Pharmaceuticals, Inc.
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