Navigation Links
New and Updated Online Tutorials for ArrayExpress, Allen Brain Atlas and CleanEx from OpenHelix
Date:8/13/2009

Comprehensive tutorials on the publicly available ArrayExpress, Allen Brain Atlas and CleanEx databases enable researchers to quickly and effectively use these invaluable resources.

Seattle, WA (PRWEB) August 13, 2009 -- OpenHelix today announced the availability of new tutorial suites on ArrayExpress, Allen Mouse Brain Atlas and CleanEx. ArrayExpress is one of the largest international public repositories for storage and sharing of gene expression and other microarray data. Allen Mouse Brain Atlas, from the Allen Brain Institute is a database of spatially mapped large-scale gene expression data from a genome wide survey of expression patterns in the C57BL/6J adult mouse brain. CleanEx provides an online database of genome-wide gene expression data. These three new tutorials in conjunction with additional OpenHelix tutorials on DAVID, VISTA, GEO, DBTSS, NCBI Entrez and many others, give the researcher an excellent set of training resources to assist in their gene expression research.

The tutorial suites, available for single purchase or through a low- priced yearly subscription to all OpenHelix tutorials, contain an online, narrated, multi-media tutorial, which runs in just about any browser connected to the web, along with slides with full script, handouts and exercises. These tutorials will teach users:

Array Express

 
  • to query the archive of ArrayExpress for records of experiments, arrays, and protocols, and to export data
  • to query for expression profiles of genes, and identify groups of genes with similar expression profiles
  • to find conditions under which a gene is differentially expressed, and to find genes differentially expressed under certain conditions

Allen Brain Atlas
 
  • to access the Allen Reference Atlas, atlas legend, and structure ontology
  • to perform effective gene expression searches of the Allen Mouse Brain Atlas
  • to locate gene expression image datasets from the search results using the List View and Thumbnail Views
  • how to use the Single and Multiple Image Viewers
  • how to download and use the Brain Explorer application

CleanEx
 
  • to find information on transcript abundance and expression targets by gene names
  • to extract numerical expression data from CleanEx
  • to search for datasets or subsets representing biological conditions of interest, using MeSH terms
  • to identify over- or under-expressed genes in a dataset, and examine the expression pattern of these genes in other datasets
  • to identify genes whose expression levels correlate with a biological condition across multiple datasets

With the tutorials, researchers can quickly learn to effectively and efficiently use these resources. The scripts, handouts and other materials can also be used as a reference or for training others.
To find out more about these and over 70 other tutorial suites visit the OpenHelix Catalog and OpenHelix. Or visit the OpenHelix Blog for up-to-date information on genomics and genomics resources.

About OpenHelix:

OpenHelix, LLC, (www.openhelix.com) provides the genomics knowledge you need when you need it. OpenHelix provides online self-run tutorials and on-site training for institutions and companies on the most powerful and popular free, web-based, publicly accessible bioinformatics resources. In addition, OpenHelix is contracted by resource providers to provide comprehensive, long-term training and outreach programs.

Contact:

Scott Lathe
OpenHelix
(888) 861-5051
www.openhelix.com

###

Read the full story at http://www.prweb.com/releases/2009/08/prweb2724554.htm.


'/>"/>
Source: PRWeb
Copyright©2009 Vocus, Inc.
All rights reserved

Related medicine news :

1. Decision Resources Updated Rheumatoid Arthritis Report Now Includes Forecast for Rigel Pharmaceuticals Fostamatinib Disodium
2. Updated CDC Travel Health Book Released
3. Students Connect with Stable Careers Through Updated Medical Assistant Career Resources on All Allied Health Schools
4. American Academy of Dermatology Issues Updated Position Statement on Vitamin D
5. Lung Cancer Alliance Releases Updated 2009 Facts About Lung Cancer
6. BioVex To Announce Updated Survival Data From a Phase II Clinical Study of OncoVEX GM-CSF in Metastatic Melanoma at The 2009 American Society of Clinical Oncology Meeting
7. Glenwood System LLC'S GlaceEMR Receives 08 CCHIT Certification Software Complies with Updated Interoperability Requirements
8. T-System Releases Free Clinician Swine Flu Templates, Incorporating Updated CDC Interim Guidelines for Diagnosis and Treatment
9. Discount Medical Supplies Superstore Announces Newly Updated Website: Easy Shopping, Hundreds of Top Brands
10. US releases updated clinical guidelines for HIV-associated opportunistic infections
11. Early Detection Remains Key in Updated NCCN Guidelines for Ovarian Cancer
Post Your Comments:
*Name:
*Comment:
*Email:
(Date:6/25/2016)... , ... June 25, 2016 , ... ... policy issues and applications at AcademyHealth’s Annual Research Meeting June 26-28, 2016, at ... on several important health care topics including advance care planning, healthcare costs and ...
(Date:6/25/2016)... ... June 25, 2016 , ... "With 30 hand-drawn hand ... project," said Christina Austin - CEO of Pixel Film Studios. , ProHand Cartoon’s ... within Final Cut Pro X . Simply select a ProHand generator and drag ...
(Date:6/25/2016)... ... 25, 2016 , ... Dr. Calvin Johnson has dedicated his ... implemented orthobiologic procedures as a method for treating his patients. The procedure is ... to perform the treatment. Orthobiologics are substances that orthopaedic surgeons use to help ...
(Date:6/24/2016)... (PRWEB) , ... June 24, 2016 , ... A recent ... that most people are unfamiliar with. The article goes on to state that individuals ... also many of these less common operations such as calf and cheek reduction. The ...
(Date:6/24/2016)... ... ... was in a crisis. Her son James, eight, was out of control. Prone to extreme ... “When something upset him, he couldn’t control his emotions,” remembers Marcy. “If there was ... other children and say he was going to kill them. If we were driving ...
Breaking Medicine News(10 mins):
(Date:6/23/2016)... , June 23, 2016 Any dentist who ... challenges of the current process. Many of them do not ... the technical difficulties and high laboratory costs involved. And those ... offer it at such a high cost that the majority ... Dr. Parsa Zadeh , founder of Dental ...
(Date:6/23/2016)... -- Roche (SIX: RO, ROG; OTCQX: RHHBY) announced that ... PCT (procalcitonin) assay as a dedicated testing solution for ... clearance, Roche is the first IVD company in the ... risk assessment and management. PCT is a ... in blood can aid clinicians in assessing the risk ...
(Date:6/23/2016)... Research and Markets has announced the addition of the ... offering. The current unmet ... for MedImmune to enter. The US ageing population creates a ... considerable growth for effective anti-influenza medications. The introduction of a ... development is still in its infancy. Key ...
Breaking Medicine Technology: