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Elsevier's BrainNavigator 3.0 reflects the next step in enhancing neurological research
Date:10/5/2010

tinues to integrate digitized versions of the leading atlases. Other new functions include:

  • Linking to the Allen Mouse Brain Atlas gene expression database. The open online Allen Mouse Brain Atlas, created by the Allen Institute for Brain Science, is a critical go-to resource for neuroscientists. Based on the Allen Institute's public application programming interface (API), users can now readily access Atlas data from within BrainNavigator. BrainNavigator 3.0both free and subscription versionsallows users to easily overlay this gene expression data with anatomical information, helping them visualize which genes are expressed in various regions of the brain and to plan their experiments with greater accuracy, efficiency and validity.

  • Create and save a series of slices from 3D to 2D. BrainNavigator 3.0 includes an improved version of its virtual brain slicing feature. Researchers are now able to determine the angle of the cut and subsequently virtually create a series of slices from one end of the brain to the other automatically, at their desired thickness. This process closely approaches the process in the lab with a real brain. The series of images can also be saved for use in the 2D Navigator for precise annotation and documentation of their work.

  • Inclusion of fiber tracts. Over 70 new structures have been added for each rodent atlas. They are available in the 2D browser and in the 3D models. Fiber tracts are often used as landmarks in the brain, and when used with the injection planning tool, they allow users to plan so they can avoid penetrating certain areas as needed.

  • Inclusion of the rat and mouse chemoarchitectonic atlases. The chemoarchitectonic images provide more accurate delineation of structures and having multiple sources to compare creates deeper understanding of the user's own research.

"Users of our open online Allen Mouse Brain Atlas have long asked to be able to view
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Contact: Harald Boersma
H.Boersma@elsevier.com
31-204-852-736
Elsevier
Source:Eurekalert

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