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Computer-assisted diagnosis tools to aid pathologists
Date:1/31/2011

Ashok Krishnamurthy, Ph.D., interim co-executive director of the center, and Siddharth Samsi, a computational science researcher there and an OSU graduate student in Electrical and Computer Engineering, put the power of a supercomputer behind the process.

"Our group has been developing tools for grading of follicular lymphoma with promising results," said Samsi. "We developed a new automated method for detecting lymph follicles using stained tissue by analyzing the morphological and textural features of the images, mimicking the process that a human expert might use to identify follicle regions. Using these results, we developed models to describe tissue histology for classification of FL grades."

Histological grading of FL is based on the number of large malignant cells counted in within tissue samples measuring just 0.159 square millimeters and taken from ten different locations. Based on these findings, FL is assigned to one of three increasing grades of malignancy: Grade I (0-5 cells), Grade II (6-15 cells) and Grade III (more than 15 cells).

"The first step involves identifying potentially malignant regions by combining color and texture features," Samsi explained. "The second step applies an iterative watershed algorithm to separate merged regions and the final step involves eliminating false positives."

The large data sizes and complexity of the algorithms led Gurcan and Samsi to leverage the parallel computing resources of OSC's Glenn Cluster in order to reduce the time required to process the images. They used MATLAB and the Parallel Computing Toolbox to achieve significant speed-ups. Speed is the goal of the National Cancer Institute-FUNDED research project, but accuracy is essential. Gurcan and Samsi compared their computer segmentation results with manual segmentation and found an average similarity score of 87.11 percent.

"This algorithm is the first crucial step in a computer-aided grading system for Follicu
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Contact: Mr. Jamie Abel
jabel@osc.edu
614-292-6495
Ohio Supercomputer Center
Source:Eurekalert  

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