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Protocol for GenomePlex Whole Genome Amplification from Plant

he sample on ice and centrifuge briefly.
  • Add 1 l Library Preparation Enzyme, mix thoroughly, and centrifuge briefly.
  • Place sample in thermal cycler and incubate as follows:
    • 16 C for 20 minutes
    • 24 C for 20 minutes
    • 37 C for 20 minutes
    • 75 C for 5 minutes
    • 4 C hold
  • Remove samples from thermal cycler and centrifuge briefly. Samples may be amplified immediately or stored at - 20 C up to three days.

    Amplification

    1. Add the following reagents to the entire 15 l reaction:
      • 7.5 l 10x Amplification Master Mix
      • 47.5 l Nuclease Free Water
      • 5.0 l JumpStart Taq DNA Polymerase (12.5 units)
    2. Mix thoroughly, centrifuge briefly, and begin thermocycling:
      Initial Denaturation 95 C for 3 minutes
      Perform 14 cycles as follows:
      • Denature 95 C for 15 seconds
      • Anneal/Extend 65 C for 5 minutes
    3. After cycling is complete, maintain the reactions at 4 C or store at -20 C until ready for analysis or purification.

    VI. Quantification of Amplified Products
    The amount of amplified genomic DNA can be detected with or without purification. For the highest quality samples of DNA we strongly recommend cleaning up the samples after amplification. The amplified products can be measured with the PicoGreen dsDNA Quantitation Assay (Molecular Probes Inc. Product # P-7589). Another method of detecting the amplified products is spectrophotometric absorption (OD260) on a NanoDrop instrument.

    VII. Purification of Amplified Products

    • Performed with GenElute PCR Clean-Up Kit (NA1020)
      1. Insert a GenElute Miniprep Binding Column (with a blue o-ring) into a provided collection tube, if not already assembled. Add 0.5 ml of the Column Preparation Solution to eac
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