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Profiler at the cellular level
Date:9/1/2011

Extensive groundwork was required to achieve this result. Benenson and his team had to first find out which combinations of molecules are unique to HeLa cells. They looked among the molecules that belong to the class of compounds known as microRNA (miRNA) and identified one miRNA combination, or profile, that was typical of a HeLa cell but not any other healthy cell type.

Finding the profile was a challenging task. In the human body there are about 250 different healthy cell types. In addition, there are numerous variants of cancer cells, of which hundreds can be grown in the laboratory. Still greater is the diversity of miRNA: between 500 to 1000 different species have been described in human cells. Each cell type, healthy or diseased, has different miRNA molecules switched on or off, says Benenson.

Five factors for cancer profile

Creating a miRNA "profile" is not unlike finding a set of symptoms to reliably diagnose a disease: One symptom alone, such as fever, can never characterize a disease. The more information is available to a doctor, the more reliable becomes his diagnosis, explains the professor, who came to ETH from Harvard University a year and a half ago. The researchers have therefore sought after several factors that reliably distinguish HeLa cancer cells from all other healthy cells. It turned out that a combination of only five specific miRNAs, some present at high levels and some present at very low levels, is enough to identify a HeLa cell among all healthy cells.

A network operates similar to a computer

The miRNA factors are subjected to Boolean calculations in the very cell in which they are detected. The biocomputer combines the factors using logic operations such as AND and NOT, and only generates the required outcome, namely cell death, when the entire calculation with all the factors results in a logical TRUE value, says Benenson. Indeed, the researchers were able to demonstrate
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Contact: Kobi Benenson
kobi.benenson@bsse.ethz.ch
41-613-873-338
ETH Zurich/Swiss Federal Institute of Technology
Source:Eurekalert

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