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Future prospects of application of nanobiotechnology for biomarkers 80
Bioinformatics 81
Biomarker Workflow Guide 81
Analysis of microarray data for selecting useful biomarkers 81
Role of bioinformatics in discovery of protein biomarkers 82
Role of bioinformatics in detection of cancer biomarkers 82
Biomarker databases 83
Gene networks as biomarkers 83
Role of bioinformatics in integrating various data and biomarker discovery 83
Evaluation of biomarker studies 84
3. Biomarkers and Molecular Diagnostics 85
Introduction 85
Molecular diagnostic technologies 85
Polymerase chain reaction 85
Amplification 85
Target selection 86
Detection of amplified DNA 86
Limitations of PCR 86
Real-time PCR systems 87
Limitations of real-time PCR 87
Future applications of real-time qPCR 88
Real-time qPCR for quantification of circulating mtDNA 88
Combined PCR-ELISA 88
Non-PCR methods 89
Linked Linear Amplification 89
Transcription mediated amplification 89
Rapid analysis of gene expression 89
WAVE nucleic acid fragment analysis system 90
DNA probes with conjugated minor groove binder 90
Rolling circle amplification technology 91
Gene-based diagnostics through RCAT 91
RCAT-immunodiagnostics 92
RCAT-biochips 92
RCAT-pharmacogenomics 92
Circle-to-circle amplification 92
Biochips and microarrays 93
Applications of biochips/microarrays 93
Role of biochip/microarrays in discovery of biomarkers 94
Biomarkers and high throughput molecular screening 94
Detection and expression profiling of miRNA 95
Real-time PCR for expression profiling of miRNAs 95
Real-time PCR for expression profiling of miRNAs 95
Use of LNA to explore miRNA 95
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