Navigation Links
Virginia Bioinformatics Institutes launches microbial database

Researchers at the Virginia Bioinformatics Institute at Virginia Tech have launched a publicly-available microbial database to host a range of microbial genome sequences.

The VBI Microbial Database (VMD), which is described in a recent article published in Nucleic Acids Research (Vol.34, D379-D381), contains genome sequence and annotation data for the plant pathogens Phytophthora sojae and Phytophthora ramorum. The purpose of the database is to make the recently completed genome sequences of these pathogens as well as powerful analytical tools widely available to researchers in one integrated resource. The work described in the paper was completed by Brett Tyler, VBI research professor and professor of plant pathology, physiology, and weed science at Virginia Tech, and VBI researchers Sucheta Tripathy, Varun Pandey, Bing Fang, and Fidel Salas.

VMD is an integrated resource that includes community annotation features, toolkits, and resources to perform complex queries of biological information. The project's researchers created a browser, which makes it easy for users to view the genome sequence data and connect to detailed annotation pages for each sequence. The community annotation interface is available for registered members to add or edit annotations.

The database will be expanded in 2006 to include genome sequences for the fungal pathogen Alternaria brassicicola and the oomycete pathogen Hyaloperonospora parasitica, both of which can infect the model plant Arabidopsis. In addition, support for proteomic and microarray data will be added, which will be linked to the functional genomic data and the genome sequences.

P. ramorum, also known as sudden oak death, is a serious fungal pathogen that has attacked and killed tens of thousands of oak trees in California and Oregon; P. sojae, the sister pathogen of P. ramorum, causes serious damage to soybean crops. Tyler and collaborators, in conjunction with the U.S. Department of Energy ( DOE) Joint Genome Institute (JGI), successfully completed the genome sequences of the pathogens in 2004.

The database can be accessed by visiting


Source:Virginia Tech

Related biology news :

1. Virginia Tech group adds tools to DNA-targeted anti-cancer drugs
2. Virginia Tech, Nanjing Institute researchers discover half-billion year-old fossils
3. Virginia Tech football player uses prototype cast
4. Virginia Tech scientists develop process for creating biocompatible fibers
5. Virginia Tech helping to develop higher quality, disease-resistant wheat varieties
6. Virginia Techs System X supercomputer provides super tool for simulation of cell division
7. Bioinformatics reveals new gene regulation system
8. BioMed Central welcomes the new National Institutes of Health public access policy
9. UCLA launches $20 million stem cell institute to investigate HIV, cancer and neurological disorders
10. UNC launches study of liver injury caused by drugs
11. DOE JGI launches IMG public online microbial genome data clearinghouse
Post Your Comments:

(Date:11/17/2015)... Mass. , Nov. 17, 2015 Pressure ... leader in the development and sale of broadly enabling, ... worldwide life sciences industry, today announced it has received ... its $5 million Private Placement (the "Offering"), increasing the ... $4,025,000.  One or more additional closings are expected in ...
(Date:11/12/2015)... , Nov. 11, 2015   Growing need ... analytical tools has been paving the way for ... determination of discrete analytes in clinical, agricultural, environmental, ... being predominantly used in medical applications, however, their ... sectors due to continuous emphasis on improving product ...
(Date:11/9/2015)... Nov. 09, 2015 ... of the "Global Law Enforcement Biometrics ... --> ) has announced ... Enforcement Biometrics Market 2015-2019" report to ... Markets ( ) has announced the ...
Breaking Biology News(10 mins):
(Date:11/25/2015)... BRUSSELS , November 25, 2015 ... in cat and human plaque and pave the way for ... health problems in cats     ... the most commonly diagnosed health problems in cats, yet relatively ... until now. Two collaborative studies have been conducted by researchers ...
(Date:11/25/2015)... (PRWEB) , ... November 25, 2015 , ... ... and the Organization of Black Aerospace Professionals (OPBAP) has been formalized with the ... other AMA team leaders met with OPBAP leaders Capt. Karl Minter and Capt. ...
(Date:11/24/2015)... , Nov. 24, 2015  Asia-Pacific (APAC) holds ... organisation (CRO) market. The trend of outsourcing to ... margins but higher volume share for the region ... scale, however, margins in the CRO industry will ... Market ( ), finds that the ...
(Date:11/24/2015)... , Nov. 24, 2015 /CNW/ - iCo Therapeutics ("iCo" ... reported financial results for the quarter ended September ... in Canadian dollars and presented under International Financial ... States ," said Andrew Rae , ... regarding iCo-008 are not only value enriching for ...
Breaking Biology Technology: