Navigation Links
Virginia Bioinformatics Institutes launches microbial database

Researchers at the Virginia Bioinformatics Institute at Virginia Tech have launched a publicly-available microbial database to host a range of microbial genome sequences.

The VBI Microbial Database (VMD), which is described in a recent article published in Nucleic Acids Research (Vol.34, D379-D381), contains genome sequence and annotation data for the plant pathogens Phytophthora sojae and Phytophthora ramorum. The purpose of the database is to make the recently completed genome sequences of these pathogens as well as powerful analytical tools widely available to researchers in one integrated resource. The work described in the paper was completed by Brett Tyler, VBI research professor and professor of plant pathology, physiology, and weed science at Virginia Tech, and VBI researchers Sucheta Tripathy, Varun Pandey, Bing Fang, and Fidel Salas.

VMD is an integrated resource that includes community annotation features, toolkits, and resources to perform complex queries of biological information. The project's researchers created a browser, which makes it easy for users to view the genome sequence data and connect to detailed annotation pages for each sequence. The community annotation interface is available for registered members to add or edit annotations.

The database will be expanded in 2006 to include genome sequences for the fungal pathogen Alternaria brassicicola and the oomycete pathogen Hyaloperonospora parasitica, both of which can infect the model plant Arabidopsis. In addition, support for proteomic and microarray data will be added, which will be linked to the functional genomic data and the genome sequences.

P. ramorum, also known as sudden oak death, is a serious fungal pathogen that has attacked and killed tens of thousands of oak trees in California and Oregon; P. sojae, the sister pathogen of P. ramorum, causes serious damage to soybean crops. Tyler and collaborators, in conjunction with the U.S. Department of Energy ( DOE) Joint Genome Institute (JGI), successfully completed the genome sequences of the pathogens in 2004.

The database can be accessed by visiting http://phytophthora.vbi.vt.edu


'"/>

Source:Virginia Tech


Related biology news :

1. Virginia Tech group adds tools to DNA-targeted anti-cancer drugs
2. Virginia Tech, Nanjing Institute researchers discover half-billion year-old fossils
3. Virginia Tech football player uses prototype cast
4. Virginia Tech scientists develop process for creating biocompatible fibers
5. Virginia Tech helping to develop higher quality, disease-resistant wheat varieties
6. Virginia Techs System X supercomputer provides super tool for simulation of cell division
7. Bioinformatics reveals new gene regulation system
8. BioMed Central welcomes the new National Institutes of Health public access policy
9. UCLA launches $20 million stem cell institute to investigate HIV, cancer and neurological disorders
10. UNC launches study of liver injury caused by drugs
11. DOE JGI launches IMG public online microbial genome data clearinghouse
Post Your Comments:
*Name:
*Comment:
*Email:


(Date:3/11/2016)... , March 11, 2016 ... new market research report "Image Recognition Market by Technology ... (Marketing and Advertising), by Deployment Type (On-Premises and Cloud), ... To 2022", published by MarketsandMarkets, the global market is ... to USD 29.98 Billion by 2020, at a CAGR ...
(Date:3/10/2016)... 2016   Unisys Corporation (NYSE: UIS ) ... (CBP) is testing its biometric identity solution at the Otay ... to help identify certain non-U.S. citizens leaving the country. ... to help determine the efficiency and accuracy of using biometric ... will run until May 2016. --> the ...
(Date:3/9/2016)... HAMBURG, Germany , March 9, 2016 ... African country,s government identified that more than 23,000 public ... name or had been receiving their salary unlawfully.    ... West African country,s government identified that more than 23,000 ... recorded name or had been receiving their salary unlawfully. ...
Breaking Biology News(10 mins):
(Date:5/26/2016)... New Jersey and READING, ... Indegene ( http://www.indegene.com ), a leading ... to life science, pharmaceutical and healthcare organisations and ... of innovative scientific support throughout the product lifecycle, ... with the launch of IntraScience.      ...
(Date:5/26/2016)... ... May 26, 2016 , ... FireflySci has been manufacturing ... laboratories all over the globe. Their cute firefly logo has been spreading to ... FireflySci makes spectrophotometer calibration standards that never require recalibration. These revolutionary standards ...
(Date:5/25/2016)... ... May 25, 2016 , ... The American Medical Informatics Association ... the National Coordinator for Health IT (ONC) outlining a measurement approach to interoperability ... available when and where it was needed. The organization of health informatics professionals ...
(Date:5/24/2016)... ... May 24, 2016 , ... Cell therapies ... will be accelerated by research at Worcester Polytechnic Institute (WPI) that yielded a ... and tissue regeneration. , The novel method, developed by WPI faculty members Raymond ...
Breaking Biology Technology: