Navigation Links
Virginia Bioinformatics Institutes launches microbial database

Researchers at the Virginia Bioinformatics Institute at Virginia Tech have launched a publicly-available microbial database to host a range of microbial genome sequences.

The VBI Microbial Database (VMD), which is described in a recent article published in Nucleic Acids Research (Vol.34, D379-D381), contains genome sequence and annotation data for the plant pathogens Phytophthora sojae and Phytophthora ramorum. The purpose of the database is to make the recently completed genome sequences of these pathogens as well as powerful analytical tools widely available to researchers in one integrated resource. The work described in the paper was completed by Brett Tyler, VBI research professor and professor of plant pathology, physiology, and weed science at Virginia Tech, and VBI researchers Sucheta Tripathy, Varun Pandey, Bing Fang, and Fidel Salas.

VMD is an integrated resource that includes community annotation features, toolkits, and resources to perform complex queries of biological information. The project's researchers created a browser, which makes it easy for users to view the genome sequence data and connect to detailed annotation pages for each sequence. The community annotation interface is available for registered members to add or edit annotations.

The database will be expanded in 2006 to include genome sequences for the fungal pathogen Alternaria brassicicola and the oomycete pathogen Hyaloperonospora parasitica, both of which can infect the model plant Arabidopsis. In addition, support for proteomic and microarray data will be added, which will be linked to the functional genomic data and the genome sequences.

P. ramorum, also known as sudden oak death, is a serious fungal pathogen that has attacked and killed tens of thousands of oak trees in California and Oregon; P. sojae, the sister pathogen of P. ramorum, causes serious damage to soybean crops. Tyler and collaborators, in conjunction with the U.S. Department of Energy ( DOE) Joint Genome Institute (JGI), successfully completed the genome sequences of the pathogens in 2004.

The database can be accessed by visiting http://phytophthora.vbi.vt.edu


'"/>

Source:Virginia Tech


Related biology news :

1. Virginia Tech group adds tools to DNA-targeted anti-cancer drugs
2. Virginia Tech, Nanjing Institute researchers discover half-billion year-old fossils
3. Virginia Tech football player uses prototype cast
4. Virginia Tech scientists develop process for creating biocompatible fibers
5. Virginia Tech helping to develop higher quality, disease-resistant wheat varieties
6. Virginia Techs System X supercomputer provides super tool for simulation of cell division
7. Bioinformatics reveals new gene regulation system
8. BioMed Central welcomes the new National Institutes of Health public access policy
9. UCLA launches $20 million stem cell institute to investigate HIV, cancer and neurological disorders
10. UNC launches study of liver injury caused by drugs
11. DOE JGI launches IMG public online microbial genome data clearinghouse
Post Your Comments:
*Name:
*Comment:
*Email:


(Date:4/11/2017)... NXT-ID, Inc. (NASDAQ:   NXTD ) ... appointment of independent Directors Mr. Robin D. Richards ... Directors, furthering the company,s corporate governance and expertise. ... Gino Pereira , Chief Executive ... their guidance and benefiting from their considerable expertise as we ...
(Date:4/5/2017)... April 4, 2017 KEY FINDINGS ... expand at a CAGR of 25.76% during the forecast ... the primary factor for the growth of the stem ... https://www.reportbuyer.com/product/4807905/ MARKET INSIGHTS The global stem cell ... application, and geography. The stem cell market of the ...
(Date:3/30/2017)... HONG KONG , March 30, 2017 ... developed a system for three-dimensional (3D) fingerprint identification by adopting ground ... technology into a new realm of speed and accuracy for use ... applications at an affordable cost. ... ...
Breaking Biology News(10 mins):
(Date:5/23/2017)... ... 23, 2017 , ... Energetiq Technology, a world leader in ... to accommodate its rapid growth. , The renovations at the company’s headquarters in ... existing areas. The expansion includes, a state-of-the-art engineering facility, and a second clean ...
(Date:5/23/2017)... ... 23, 2017 , ... Cambridge Semantics , the leading provider of Big ... World Conference and Expo in Boston May 23-25 with a featured speaker and ... Smart Data Lake is also a finalist for the Best of Show award. , ...
(Date:5/22/2017)... ... May 22, 2017 , ... Baltimore biotech firm, PathSensors, announced ... community in developing and issuing recommendations to grow Maryland's biohealth industry and position ... 2023. , The recommendations are contained in a report from ...
(Date:5/21/2017)... ... May 20, 2017 , ... CNSDose ... lengthy trial and error process by finding the right antidepressant faster. CNSDose ... the doctor-patient relationship through a personalized approach to treatment. , A ...
Breaking Biology Technology: