Navigation Links
Why we have plenty of fish in the sea

HUNTSVILLE, Ala. -- New work from the HudsonAlpha Institute for Biotechnology, with collaborators at Stanford University and five other groups, has pinpointed evolution in action.

By determining genomic sequence from many groups of stickleback fish, the scientists were able to show specific genomic changes leading to the ability of different fish populations to adapt to new environments. "We were pleased with the ability of genomics to show us what molecular changes are important in evolutionary processes," said Richard Myers, Ph.D., president and director of HudsonAlpha.

At the end of the last ice age, marine stickleback fish were present in many waters and then became separated into different populations in lakes and streams worldwide. These populations evolved separate traits, such as number of spines, body length or eye size, which allowed them to thrive in their specific habitat.

To tie these traits to specific DNA changes, the scientists generated a reference of the threespine stickleback fish genome at high quality. "With our reference genome and genetic map for stickleback, we will now be able to use it as a model organism for future studies of adaptation and environmental selection," said HudsonAlpha faculty investigator Jeremy Schmutz.

Scientists then sequenced 21 pairs of fish that varied at different traits and compared them to each other and to the reference fish genome. Small regions of the fish genome stood out due to changes in the genomic DNA, and many of these could be related to how the fish look and behave.

Two interesting findings stood out. First, the changes between fish populations often happened not by mutations in single DNA bases, but by inversions of very large chunks of DNA on fish chromosomes. When these large inversions of DNA occur, fish can no longer breed with each other effectively and start to become separate species.

Second, the scientists saw that when evolution allowing fish to adapt to their environment seemed to come from single DNA base changes, these were most often in regions of the genome that regulate genes and proteins, instead of in the genes themselves. In contrast, previous work has shown that in laboratory or domesticated animals, changes in genes and proteins are found more often.

Jane Grimwood, Ph.D., also a faculty investigator at HudsonAlpha, explained, "The predominance of regulatory changes in the evolution of sticklebacks suggests that natural populations may behave differently than domesticated animals, and our genetic mapping of many species will advance similar studies in natural and wild organisms."

HudsonAlpha researchers have been part of the NHGRI - NIH funded Center for Excellence in Genome Sciences, or CEGS, project for developing stickleback as a model organism since 2002. As part of this effort, they and colleagues at Stanford University have produced genomic resources for several freshwater and marine stickleback fish. Currently, the HudsonAlpha Genome Sequencing Center is building a reference sequence for the Y chromosome for stickleback, as the sequenced fish was a female.


Contact: Chris Gunter
HudsonAlpha Institute for Biotechnology

Related biology news :

1. Illusion of plenty masking collapse of 2 key Southern California fisheries
Post Your Comments:
(Date:4/15/2016)... CHICAGO , April 15, 2016  A ... companies make more accurate underwriting decisions in a ... offering timely, competitively priced and high-value life insurance ... health screenings. With Force Diagnostics, rapid ... and lifestyle data readings (blood pressure, weight, pulse, ...
(Date:4/14/2016)... , April 14, 2016 ... Malware Detection, today announced the appointment of Eyal ... new role. Goldwerger,s leadership appointment comes at ... heels of the deployment of its platform at several ... biometric technology, which discerns unique cognitive and physiological factors, ...
(Date:3/31/2016)... 31, 2016   ... the "Company") LegacyXChange is excited to release ... soon to be launched online site for trading 100% ... ) will also provide potential shareholders a sense of ... to an industry that is notorious for fraud. The ...
Breaking Biology News(10 mins):
(Date:6/23/2016)... (PRWEB) , ... June 23, 2016 , ... ... is pleased to announce the launch of their brand, UP4™ Probiotics, into Target ... over 35 years, is proud to add Target to its list of well-respected ...
(Date:6/23/2016)... 23, 2016 Houston Methodist Willowbrook Hospital ... Sports Association to serve as their official health ... Methodist Willowbrook will provide sponsorship support, athletic training ... association coaches, volunteers, athletes and families. ... Sports Association and to bring Houston Methodist quality ...
(Date:6/23/2016)... --  EpiBiome , a precision microbiome engineering company, today ... from Silicon Valley Bank (SVB). The financing will allow ... drug development efforts, as well as purchase additional lab ... been an incredible strategic partner to us – one ... provide," said Dr. Aeron Tynes Hammack , EpiBiome,s ...
(Date:6/23/2016)... LOUISVILLE, Ky. , June 23, 2016 /PRNewswire/ ... from two Phase 1 clinical trials of its ... double-blind, placebo-controlled, single and multiple ascending dose studies ... and pharmacodynamics (PD) of subcutaneous injection in healthy ... APL-2 subcutaneously (SC) either as a single dose ...
Breaking Biology Technology: