Navigation Links
Web interface defines new paradigm for life science data-sharing
Date:5/31/2011

A new lightweight web service interface for accessing massive amounts of life science research data across multiple public and private domains has been developed by researchers at RIKEN, Japan's flagship research institute. Through the powerful RIKEN Scientists' Networking System (SciNetS), the service provides a secure, flexible and light weight interface to millions of data records and their network of semantic relationships, ushering in a new era of collaboration, analysis and information-sharing for life science research and applied innovation.

Gene annotation, protein structure analysis, plant ontologies, transcriptomes - dramatic increases in the size, variety and complexity of data resources in the life sciences have accentuated the challenges of data analysis in the information age. Adding to these challenges, much of the data handled at each step of the research process is private, making integration with public data more difficult and hindering collaboration. Overcoming these challenges requires systems for securely integrating data resources and making their information widely available through a flexible interface.

The RIKEN Bioinformatics And Systems Engineering (BASE) division, Japan's leading research institute focusing on the integration and publication of life science research data, has now developed such an interface. Referred to as Semantic-JSON, the interface accesses a "virtual laboratory cloud centre" also developed at BASE named the Scientists' Networking System (SciNetS), which brings together, as of May 2011, a total of 192 public database projects both internal and external to RIKEN. SciNetS creates common ground for sharing life science data resources by linking these resources together in a network of semantic relationships based on standardized Semantic Web techniques.

Semantic-JSON provides a flexible interface to SciNetS on the web, enabling bioinformaticians to access specific data from across the SciNetS network using the programming languages and information tools they normally use in their research. The interface does so by defining a set of simple but relevant commands for accessing and searching SciNetS data and their semantic relationships, delivering results in the widely-used JavaScript Object Notation (JSON) format.

Already, RIKEN has successfully applied Semantic-JSON to a number of projects, including international data collaborations on mouse phenotypes, domestic integrated database projects, and the GenoCon International Rational Genome Design Contest. Looking ahead, RIKEN plans to use the interface to distribute life science data across its research centres and with international collaborators via the SciNetS project, broadening the life-sciences Semantic Web data universe and promising to achieve not just comprehensive understanding of various life phenomena, but also collaborative breakthroughs for medicine, industry and the environment.

This research result will appear in the online version of the British scientific journal Nucleic Acids Research on June 1.


'/>"/>

Contact: Tetsuro Toyoda
koho@riken.jp
81-455-039-111
RIKEN
Source:Eurekalert  

Related biology news :

1. Book details viability of wood to energy market in southern wildland-urban interface areas
2. Grant to fund pioneering brain-computer interface technology
3. Brain-computer interface, developed at Brown, begins new clinical trial
4. New research program BioInterfaces launched
5. Researchers use brain interface to post to Twitter
6. Singapore research team first place in Brain-Computer Interface contest
7. International copper industry defines role in the fight against hospital infections
8. Scripps research team defines new painkilling chemical pathway
9. Water for an integrative climate paradigm
10. IFT session looks at changes in dietary fat and heart disease paradigm
11. Symposium spotlights new paradigms in genomics, celebrates AIDS-fighting drug at 25 years
Post Your Comments:
*Name:
*Comment:
*Email:
Related Image:
Web interface defines new paradigm for life science data-sharing
(Date:2/13/2017)...  RSA Conference -- RSA, a Dell Technologies business, ... enhance fraud detection and investigation across digital environments ... & Risk Intelligence Suite. The new platform is ... from internal and external sources as well as ... from targeted cybercrime attacks. "Fraudsters are ...
(Date:2/10/2017)... -- Research and Markets has announced the ... Scientific and Commercial Aspects" to their offering. ... Biomarkers play ... therapy for selection of treatment as well for monitoring the ... disease in modern medicine. Biochip/microarray technologies and next generation sequencing ...
(Date:2/8/2017)... , Feb. 8, 2017 About Voice Recognition ... to match it against a stored voiceprint template. ... pitch, cadence, and tone are compared to distinguish ... hardware installation, as most PCs already have a ... transactions. Voice recognition biometrics are most likely to ...
Breaking Biology News(10 mins):
(Date:2/23/2017)... NEW YORK , Feb. 23, 2017 /PRNewswire/ ... leading digital health company, and Digital Noema ... and remote patient monitoring, announce they are partnering ... DN Telehealth maximizes collaboration compatibility for ... consultations beyond a physical clinical setting to include ...
(Date:2/23/2017)... ... 23, 2017 , ... BellBrook Labs is formalizing a significant ... of biochemical analyses critical for Lead Discovery. The company’s Lead Discovery Services ... including inhibitor potency and selectivity, mechanism of action, and inhibitor residence times on ...
(Date:2/23/2017)... , Feb. 23, 2017  MIODx announced today ... two key immunotherapy technologies from the University of ... a method to monitor a patient for response ... and CTLA-4.  The second license extends the technology ... is likely to have an immune-related adverse event ...
(Date:2/23/2017)... Feb. 23, 2017  Seattle,s upscale Capitol Hill neighborhood, with its ... place for a head lice treatment salon to set up ... Tuscan restaurant and a French bistro on E Madison Ave, ... aren,t just any old lice clinic, we pride ourselves on ... and release some of the stigma associated with lice. Everyone ...
Breaking Biology Technology: