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Using a mathematical model to evaluate microsatellite genotyping from low-quality DNA
Date:9/1/2011

Noninvasive sampling has been used in studies of endangered animals. It has the advantage of obtaining samples without affecting the target animals. However, the quality of DNA obtained by such methods is often poor and this can affect the reliability of the results. Therefore, how to obtain reliable results from samples obtained noninvasively is of widespread interest. Professor LI Baoguo and Guo Songtao at the Key Laboratory of Resource Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, set out to tackle this problem. Their work, entitled "Evaluating the reliability of microsatellite genotyping from low-quality DNA templates with a polynomial distribution model", was published in the Chinese Science Bulletin.2011, Vol 56 (24).

DNA templates from noninvasive samples, museum specimens, ancient DNA and forensic samples are often degraded or contaminated. The amount of target DNA available for genetic typing can be very low, often in the picogram range. When such low quality DNA is used for microsatellite profiling, false homozygotes and false alleles can occur leading to spurious results. To reduce the chance of false results, a multiple-tube approach was developed in which the DNA was distributed among several tubes. Compared to a single tube approach, this multi-tube approach offers more reliable genotyping from diluted DNA samples. However, the use of multiple PCR replicates can result in the sample being completely used up, especially if many loci are analyzed. In general, the smaller the amount of template in the PCR, the more prone it is to genotyping errors and the more PCR replicates are required.

Evaluating the reliability of microsatellite genotyping using low quality DNA templates can help optimize the experimental protocol. In this study, we aim to address the following questions for a given batch of samples: (i) how many amplifications are required to reach a given co
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Contact: Guo SongTao
songtaoguo@nwu.edu.cn
86-298-830-2418
Science in China Press
Source:Eurekalert  

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