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Trillions served: Massive, complex projects for DOE JGI 2012 Community Sequencing Program
Date:11/3/2011

WALNUT CREEK, Calif. -- According to roadside signs, the number of burgers served has eclipsed the billion mark, while the U.S. Department of Energy (DOE) Joint Genome Institute (JGI) will now serve up trillions of nucleotides of information from scores of newly-selected projects geared to feed the data-hungry worldwide research community.

The 2012 Community Sequencing Program (CSP) call invited researchers to submit proposals for projects that advance capabilities in fields such as plant-microbe interactions, microbes involved in carbon capture and greenhouse gas emission, and metagenomics -- the characterization of complex collections of microbes from particular environmental niches. The total allocation for the coming year's CSP portfolio will exceed 30 trillion bases (terabases or Tb), a 100-fold increase compared with just two years ago, when just a third of a terabase was allocated to more than 70 projects. This amounts to the equivalent of at least 10,000 human genomes in data.

"These selections truly take advantage of the DOE JGI's massive-scale sequencing and data analysis capabilities," said Eddy Rubin, DOE JGI Director. "The projects span the globe and the unexplored branches of the tree of life, and promise to yield a better understanding of the interplay between climate, ecosystem and organism. Still other projects are targeting improvements in biofuel feedstock production, focusing on the potential of microorganisms to improve feedstock growth and prevent devastating diseases that hinder yields."

A total of 41 CSP proposals were approved from the 152 submitted, culled from the 188 letters of intent originally received. The projects were then reviewed and approved by an outside review panel before being vetted by the DOE.

One of single largest project comes from Jeff Dangl at the University of North Carolina and his colleagues and focuses on the rhizosphere, that narrow region where microbes in the soil
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Contact: David Gilbert
degilbert@lbl.gov
DOE/Joint Genome Institute
Source:Eurekalert  

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