Navigation Links
Sequencing, annotation and comparative analysis of nine BACs of giant panda (Ailuropoda melanoleuca)
Date:3/10/2010

BGI has carried out deep sequence exploration on nine BACs of giant panda with traditional sanger sequencing methods. Sequences and structure information of new genes and repeats were predicted, which greatly fills the gaps of genomics study on giant panda. In addition, the nine sequences assembled based on traditional phrap methods provided as a validation resource for the de novo assembly accuracy of the whole genome shotgun sequencing reads of giant panda generated by the Illumina GA sequencing technology. This study is reported in Volumn 53 (Januray, 2010) of SCIENCE CHINA Life Sciences because of its significant research value.

Giant panda (Ailuropoda melanoleuca), known as the "Chinese treasure", is one of the most endangered species in the world. A survey revealed that only about 2500~3000 individuals remain in the wild. Its dietary specialization, habitat isolation, and reproductive constraints have led to a perception that this is a species at an "evolutionary dead end". In recent years, strenuous efforts have been made to study and protect this animal. Considerable knowledge of its physiology, biochemistry, genetic diversity and ecology has been gathered.

MHC II genomic region and mitochondrial sequence of giant panda were sequenced and annotated. Phylogenic tree was generated with mitochondrial sequences of giant panda and other bear speices, suggesting that giant panda belongs to the species of Usrides. Genome diversities of giant panda were also explored, suggesting that giant panda is not a species at an evolutionary "dead end". Conservation strategies should focus on the restoration and protection of wild habitat and the maintenance of the substantial regional genetic diversity.

In this work, we sequenced and assembled nine BACs of giant panda, about a genomic region of 878 kb, which greatly fills the gaps of genomic study on giant panda. Twelve protein coding genes were predicted, seven of which could be functionally
'/>"/>

Contact: Y. Zheng
zhengyang@genomics.org.cn
86-755-252-74032
Science in China Press
Source:Eurekalert

Page: 1 2

Related biology news :

1. Covering the bases: Quantum effect may hold promise for low-cost DNA sequencing, sensor applications
2. Biologist enhances use of bioinformatic tools and achieves precision in genetic annotation
3. Genomatix gets patent for comparative genomics method
4. Special issue Comparative Cognition in Context now published
5. Comparative genomics reveals molecular evolution of Q fever pathogen
6. Genomatix gives a hand in the analysis of Wayne States sequencing projects
7. Genome analysis of marine microbe reveals a metabolic minimalist
8. High-throughput analysis of gene regulation, DNA synthesis in Cold Spring Harbor Protocols
9. ARS genetic analysis helps spot sugarcane rusts
10. A forensic analysis of Hurricane Katrinas impact: methods and findings
11. Genetic analysis helps dissect molecular basis of cardiovascular disease
Post Your Comments:
*Name:
*Comment:
*Email:
(Date:3/20/2015)... --Research and Markets ( http://www.researchandmarkets.com/research/rswjb4/hand_geometry ) has announced ... Business Report" report to their offering. This ... Thousands. The report provides separate comprehensive analytics for the US, ... Europe , Asia-Pacific , ... Annual estimates and forecasts are provided for the ...
(Date:3/19/2015)... March 19, 2015  NXT-ID, Inc. (NASDAQ: NXTD ... on the growing mobile commerce market, announces its biometric payment ... clip that aired this week on Washington DC,s ... In a segment "The Next Great Thing", host ... way to pay, and ,a really big breakthrough in mobile ...
(Date:3/17/2015)... March 17, 2015 Emotient, the leader ... today announced general availability of Emotient Analytics ... the analysis of facial expressions. The system analyzes ... content, products and services. It delivers audience response ... sentiment - as derived from facial evidence of ...
Breaking Biology News(10 mins):Hand Geometry - Global Strategic Business Report 2015: An Essential Security Component for both Government & Enterprise Sector 2Hand Geometry - Global Strategic Business Report 2015: An Essential Security Component for both Government & Enterprise Sector 3Hand Geometry - Global Strategic Business Report 2015: An Essential Security Component for both Government & Enterprise Sector 4NXT-ID's Wocket Smart Wallet Featured on Fox News Segment, "The Next Great Thing" 2NXT-ID's Wocket Smart Wallet Featured on Fox News Segment, "The Next Great Thing" 3New Emotient Web Service Measures Audience Response Using On-Demand Facial Expression Analysis 2New Emotient Web Service Measures Audience Response Using On-Demand Facial Expression Analysis 3New Emotient Web Service Measures Audience Response Using On-Demand Facial Expression Analysis 4
... Fluctuations in penguin populations in the Antarctic are linked more ... to changes in their habitats, according to a new study ... Academy of Sciences . Funded in part by the Lenfest ... "winners" of changing conditions, such as large-scale ice melting, may ...
... NEW YORK (April 11, 2011) -- Weill Cornell Medical ... Surgeons have announced that The Mortimer D. Sackler, M.D. ... awarded to The Rockefeller University,s Dr. Fernando Nottebohm for ... the discovery of neuronal replacement. Dr. Nottebohm is ...
... FINDINGS: Certain differentiated cells in breast tissue can spontaneously ... researchers. Until now, scientific dogma has stated that differentiation ... return to the flexible stem-cell state on their own. ... well as for breast cancer cells. RELEVANCE: ...
Cached Biology News:Penguins that shun ice still lose big from a warming climate 2Sackler Prize awarded to pioneering neuroscientist 2Sackler Prize awarded to pioneering neuroscientist 3Scientists identify a surprising new source of cancer stem cells 2Scientists identify a surprising new source of cancer stem cells 3
(Date:4/23/2015)... Calif. , April 23, 2015  Cryoport, ... advanced cryogenic logistics solutions for the life sciences ... established its cryogenic logistics solutions within the animal ... with Yancey Farms to support the shipment of ... German Sport horse Stallions. Animal ...
(Date:4/23/2015)... -- Metanome, Inc., an industry leader in comprehensive microbiome ... name to Diversigen, Inc.  The name was changed ... source for the myriad of services and expertise ... of the microbiome.  From the wide diversity in ... that are difficult to handle, such as low ...
(Date:4/22/2015)... 2015  The Heinz Family Foundation today announced ... Awards, which will present unrestricted cash awards totaling ... creativity and determination in finding solutions to critical ... year,s recipients include a prolific cartoonist whose quirky ... personal relationships; two former Marines who are re-engaging ...
(Date:4/22/2015)... 2015 Steep Hill, the industry leader ... it has opened an investment round of $5 ...  The common stock investment round will be offered ... intended to encourage funding of small businesses by ... businesses largely relied on friends and family, venture ...
Breaking Biology Technology:Cryoport to Support the Equine Animal Husbandry Market Through Agreement with Yancey Farms 2Cryoport to Support the Equine Animal Husbandry Market Through Agreement with Yancey Farms 3Metanome Announces Corporate Name Change to Diversigen 2From a Scientist Who Develops Human Microlivers to a New Yorker Cartoonist Who Masterfully Depicts the Humor and Heartbreak of Everyday Life: The 20th Heinz Awards Honors Six Changemakers 2From a Scientist Who Develops Human Microlivers to a New Yorker Cartoonist Who Masterfully Depicts the Humor and Heartbreak of Everyday Life: The 20th Heinz Awards Honors Six Changemakers 3From a Scientist Who Develops Human Microlivers to a New Yorker Cartoonist Who Masterfully Depicts the Humor and Heartbreak of Everyday Life: The 20th Heinz Awards Honors Six Changemakers 4From a Scientist Who Develops Human Microlivers to a New Yorker Cartoonist Who Masterfully Depicts the Humor and Heartbreak of Everyday Life: The 20th Heinz Awards Honors Six Changemakers 5From a Scientist Who Develops Human Microlivers to a New Yorker Cartoonist Who Masterfully Depicts the Humor and Heartbreak of Everyday Life: The 20th Heinz Awards Honors Six Changemakers 6Steep Hill Launches $5M Limited Stock Offering 2Steep Hill Launches $5M Limited Stock Offering 3
... 28 Boston,Scientific Corporation (NYSE: BSX ) ... that Boston Scientific has completed its acquisition of ... April 16.,Under the terms of the transaction, all ... per share in cash, for a total of,approximately ...
... N.J., May 28 National Stem Cell,Holding, Inc. (OTC: ... steps to,change its name to Proteonomix, Inc. The change ... Michael Cohen, President/CEO, stated: "Our new name reflects the ... development stage and,commencing the commercialization of our technologies. These ...
... Provides Additional Global Corporate Finance, Management and ... Manufacturing ... (TSX: NVN) announced today the appointment of Gordon H.,Busenbark to ... chief financial officer of Xytis Pharmaceuticals, a privately,held development-stage specialty ...
Cached Biology Technology:Boston Scientific Completes Acquisition of CryoCor 2Boston Scientific Completes Acquisition of CryoCor 3National Stem Cell Holding, Inc. Announces the Change of Its Name to Proteonomix, Inc. 2National Stem Cell Holding, Inc. Announces the Change of Its Name to Proteonomix, Inc. 3Nventa Appoints Gordon H. Busenbark to Board of Directors 2
Can be used for the quantitative recovery of small amounts of nucleic acids within dilute solutions. 5mg/ml...
Recombinant Mouse sTNF RII/TNFRSF1B...
Human Norrin Biotinylated Affinity Purified PAb Protein Family: Other Growth Factors, Other Wnt-related Molecules...
Human VASA Biotinylated Affinity Purified PAb...
Biology Products: