Navigation Links
Salmon genome in final phases of completion
Date:11/23/2011

The International Cooperation to Sequence the Atlantic Salmon Genome (ICSASG, the "Cooperation") has awarded the Phase II contract for next-generation sequencing and analysis of the Atlantic salmon genome to the J. Craig Venter Institute (JCVI) in Rockville, Maryland. The JCVI will be sequencing the salmon genome using next-generation technologies, including assembly to integrate Sanger and next-generation sequence, and comparative genomics. This effort is expected to generate a high-quality resource for those responsible for the management of wild salmon stocks and the salmon aquaculture industry, as well as providing a reference genome for work with other salmonids.

The Cooperation was formed in 2009 as a partnership between the Research Council of Norway, the Norwegian Fishery and Aquaculture Industry Research Fund, Genome British Columbia, and the Chilean Economic Development Agency (CORFO) and its Innovation Agency InnovaChile. The group brings together expert biologists who have studied salmonids with commercial and government agencies interested in funding further study. Salmonids play a key commercial and environmental role; while some salmon genetic information is known, many fundamental questions remain.

"A fully annotated salmon genome will provide important information about the impact of cultured fish escapees on wild populations, about preservation of populations that are at risk, about strategies for fighting pathogens, and about environmental sustainability issues," says ICSASG chair Dr. Steinar Bergseth at the Research Council of Norway. "A fully assembled reference sequence available for researchers worldwide will have a major impact on research into salmon and other salmonids, such as rainbow trout."

"This is a good example showing that science allows nations and institutions to cooperate on a field where they usually are competitors" says CEO Gonzalo J. Herrera of CONICYT.

"The salmon genome is large and contains repetitive sequences which make it a more difficult genome sequence to assemble. Working with ICSASG, we will complement the Phase I data with next-generation sequence data to provide the most complete salmon genome possible," says Dr. Jason Miller PhD, an associate professor at JCVI.

Worldwide, commercial salmon production exceeds one billion pounds annually, with about 70% coming from aquaculture salmon farms. In addition to being an important economic resource, salmon and other salmonidae species such as trout are considered "sentinel species" for monitoring water quality, and are important markers for ecotoxicology studies.

"This project is a novel approach to addressing issues that are of economic and social importance to aquaculture, conservation, and the environment," says Dr. Alan Winter, President & CEO of Genome BC.


'/>"/>

Contact: Jenny Boon
jboon@genomebc.ca
778-327-8374
Genome BC
Source:Eurekalert

Related biology news :

1. Environmental conditions and predators affect Atlantic salmon survival in the Gulf of Maine
2. Salmon and other fish predators rely on no guts, no glory survival tactic
3. Warming streams could be the end for salmon
4. The same number of fishermen, but less salmon in Spanish rivers
5. Newfound hijacked proteins linked to salmonella virulence
6. E. coli, salmonella may lurk in unwashable places in produce
7. Parasite loads an underlying cause of salmon mortality, linked to land use changes
8. Salmonella stays deadly with a beta version of cell behavior
9. Scientist urges government ruling on genetically engineered salmon
10. Models show Coho salmon at risk in US urbanizing watersheds
11. New target found for nitric oxides attack on salmonella bacteria
Post Your Comments:
*Name:
*Comment:
*Email:
(Date:4/5/2017)... Allen Institute for Cell Science today announces the launch ... dynamic digital window into the human cell. The website ... deep learning to create predictive models of cell organization, ... suite of powerful tools. The Allen Cell Explorer will ... resources created and shared by the Allen Institute for ...
(Date:3/30/2017)... , March 30, 2017  On April 6-7, 2017, ... the Genome hackathon at Microsoft,s headquarters in ... competition will focus on developing health and wellness apps ... Hack the Genome is the first hackathon ... The world,s largest companies in the genomics, tech and ...
(Date:3/27/2017)... , March 27, 2017  Catholic Health ... and Management Systems Society (HIMSS) Analytics for achieving ... Adoption Model sm . In addition, CHS previously ... U.S. hospitals using an electronic medical record (EMR). ... its high level of EMR usage in an ...
Breaking Biology News(10 mins):
(Date:10/11/2017)... LAGUNA HILLS, Calif. , Oct. 11, 2017  SkylineDx ... London (ICR) and University of Leeds ... to risk-stratify patients with multiple myeloma (MM), in a multi-centric ... The University of Leeds is the ... UK, and ICR will perform the testing services to include ...
(Date:10/11/2017)... ... October 11, 2017 , ... Singh Biotechnology today ... designation to SBT-100, its novel anti-STAT3 (Signal Transducer and Activator of Transcription 3) ... able to cross the cell membrane and bind intracellular STAT3 and inhibit its ...
(Date:10/10/2017)... ... October 10, 2017 , ... For ... has won a US2020 STEM Mentoring Award. Representatives of the FirstHand program travelled ... Volunteer Experience from US2020. , US2020’s mission is to change the trajectory of ...
(Date:10/10/2017)... Oct. 10, 2017 SomaGenics announced the receipt ... to develop RealSeq®-SC (Single Cell), expected to be the ... RNAs (including microRNAs) from single cells using NGS methods. ... need to accelerate development of approaches to analyze the ... "New techniques for measuring levels of mRNAs in ...
Breaking Biology Technology: