Navigation Links
SDSC-developed software used in first global camera trap mammal study
Date:9/13/2011

A novel software system developed by researchers at the San Diego Supercomputer Center (SDSC) at the University of California, San Diego, has been used in the first global camera trap study of mammals, which made international headlines last month by emphasizing the importance of protected areas to ensure the diversity and survival of a wide range of animal populations.

The study, led by Jorge Ahumada, an ecologist with the Tropical Ecology Assessment and Monitoring Network (TEAM) at Conservation International, documented 105 species in nearly 52,000 images from seven protected areas across the Americas, Africa, and Asia. The images, according to a recent announcement by TEAM and Conservation International, reveal a wide variety of animals in their most candid moments from a minute mouse to the enormous African elephant as well as gorillas, cougars, giant anteaters and, surprisingly, even tourists and poachers. A gallery of images from the study can be found here.

Findings from the study not only the first global camera trap mammal study but also the largest camera trap study of any class of animals were published in the journal Philosophical Transactions of the Royal Society. Analysis of collected data has helped scientists confirm a key conclusion that until now was only understood through uncoordinated local study: that habitat loss and smaller reserves have a direct and detrimental impact on the diversity and survival of mammal populations.

"Our goal was to come up with a software system to address the fact that despite advances in digital image capture, field biologists still lack adequate software solutions to process and manage the increasing amount of digital information in a cost-efficient manner," said SDSC researcher Kai Lin, who led the software project.

Called DeskTEAM and developed in the context of the TEAM project, the system incorporates numerous software features and functions specifically designed for the broader camera trapping community, such as the ability to run the application locally on a laptop or desktop computer without requiring an Internet connection, as well as the ability to run on multiple operating systems. The software also has an intuitive navigational user interface which allows users to easily manage hundreds or even thousands of images; the ability to automatically extract customized metadata information from digital images to increase standardization; the availability of embedded taxonomic lists so images can be easily tagged with species identities; and the ability to export data packages consisting of data, metadata, and images in standardized formats so that they can be transferred to online data warehouses for easy archiving and dissemination. Complete details of the DeskTEAM software system can be found here.

"We have been partners with Conservation International on the TEAM project since the early days of the project, beginning in September 2007," said Chaitan Baru, a distinguished scientist at SDSC and lead of the TEAM cyberinfrastructure effort. "A talented and dedicated group of research and development staff at SDSC helped design the comprehensive cyberinfrastructure that runs the entire global TEAM network. We developed the various cyberinfrastructure components, and the services are now hosted and run out of SDSC."

In addition to Baru and Lin, the TEAM cyberinfrastructure team at SDSC includes Sandeep Chandra, Kate Kaya, and Choonhan Youn.

"What makes this study scientifically groundbreaking is that we created for the first time consistent, comparable information for mammals on a global scale setting an effective baseline to monitor change. By using this single, standardized methodology in the years to come and comparing the data we receive, we will be able to see trends in mammal communities and take specific, targeted action to save them," said Ahumada. "We hope that these data contribute to a better management of protected areas and conservation of mammals worldwide, and a more widespread use of standardized camera trapping studies to monitor these critically important animals."

The Tropical Ecology Assessment and Monitoring Network (TEAM) is a partnership that includes Conservation International, The Missouri Botanical Garden, The Smithsonian Institution and the Wildlife Conservation Society. It is partially funded by these institutions and the Gordon and Betty Moore Foundation. Local Partners in the study are: Instituto Nacional de Pesquisas da Amazonia (INPA), Conservation International Suriname, Organization for Tropical Studies, Museo Tridentino di Scienze Naturali, and Institute of Tropical Forest Conservation.


'/>"/>

Contact: Jan Zverina
jzverina@sdsc.edu
858-534-5111
University of California - San Diego
Source:Eurekalert

Related biology news :

1. ID Solutions Achieves Full-Production Delivery and Payment for Fingerprint Processing Software for TWIC
2. Entertainment Software Association Foundation awards grant to FAS for immune attack
3. InvoTech Selects M2SYS Technology for Leading-Edge Fingerprint Software Solution
4. Natural Capital Project to develop conservation software
5. New open-source software permits faster desktop computer simulations of molecular motion
6. Duke software dramatically speeds enzyme design
7. Color test enhances tomato analyzer software
8. Entrusts New Code-Signing Certificates Enhance Trust in Applications, Software Developers
9. Next-generation software system for flood warning and risk analysis to be developed
10. ACS Technologies(TM) Selects M2SYS for Innovative Biometric Software
11. M2SYS Biometric Software Solution Selected By GHG Corporation
Post Your Comments:
*Name:
*Comment:
*Email:
(Date:5/24/2016)... , May 24, 2016 Ampronix facilitates superior patient care by providing unparalleled ... medical LCD display is the latest premium product recently added to the range of ... ... ... Sony 3d Imaging- LCD Medical Display- Ampronix News ...
(Date:5/12/2016)... , May 12, 2016 WearablesResearch.com ... just published the overview results from the Q1 wave ... the recent wave was consumers, receptivity to a program ... data with a health insurance company. "We ... to share," says Michael LaColla , CEO of ...
(Date:4/28/2016)... SAN FRANCISCO and BANGALORE, India ... part of EdgeVerve Systems, a product subsidiary of Infosys (NYSE: ... service provider, today announced a global partnership that ... convenient way to use mobile banking and payment services. ... Mobility is a key innovation area for financial services, but ...
Breaking Biology News(10 mins):
(Date:6/23/2016)... ... June 23, 2016 , ... ... the launch of the Supplyframe Design Lab . Located in Pasadena, Calif., ... the future of how hardware projects are designed, built and brought to market. ...
(Date:6/23/2016)... BEACH, Calif. , June 23, 2016  Blueprint ... new biological discoveries to the medical community, has closed ... co-founder Matthew Nunez . "We have ... us with the capital we need to meet our ... will essentially provide us the runway to complete validation ...
(Date:6/23/2016)... Prairie, WI (PRWEB) , ... June 23, 2016 ... ... consultancy focused on quality, regulatory and technical consulting, provides a free webinar ... is presented on July 13, 2016 at 12pm CT at no charge. , ...
(Date:6/22/2016)... 22, 2016 Cell Applications, Inc. and ... to produce up to one billion human induced ... one week. These high-quality, consistent stem cells enable ... and spend more time doing meaningful, relevant research. ... high-volume manufacturing process that produces affordable, reliable HiPSC ...
Breaking Biology Technology: