Navigation Links
ORNL explores proteins in Yellowstone bacteria for biofuel inspiration

Studies of bacteria first found in Yellowstone's hot springs are furthering efforts at the Department of Energy's BioEnergy Science Center toward commercially viable ethanol production from crops such as switchgrass.

The current production of ethanol relies on the use of expensive enzymes that break down complex plant materials to yield sugars that are fermented into ethanol. One suggested cheaper alternative is consolidated bioprocessing, a streamlined process that uses microorganisms to break down the resistant biomass.

"Consolidated bioprocessing is like a one-pot mix," said Oak Ridge National Laboratory's Richard Giannone, coauthor on a BESC proteomics study that looked at one microorganism candidate. "You want to throw plant material into a pot with the microorganism and allow it to degrade the material and produce ethanol at the same time."

The BESC study focused on Caldicellulosiruptor obsidiansis, a naturally occurring bacterium discovered by BESC scientists in a Yellowstone National Park hot spring. The microorganism, which thrives at extremely high temperatures, breaks down organic material such as sticks and leaves in its natural environment, and scientists hope to transfer this capability to biofuel production tanks.

In a paper featured on the cover of the Journal of Proteome Research, the BESC team conducted a comparative analysis of proteins from C. obsidiansis grown on four different carbon sources, ranging from a simple sugar to more complex substrates such as pure cellulose and finally to switchgrass. The succession of carbon substrates allowed researchers to compare how the organism processes increasingly complex materials.

"This progression helps us look at how proteins change given different carbon substrates," Giannone said. "One of the goals is to identify new proteins that we haven't seen before. If an unknown protein doesn't show up on the simple sugars or cellulose, but it shows up on the switchgrass, then we can say something about that gene or proteinthat it responds to something the switchgrass is providing."

The researchers found that growth on switchgrass prompted the organism to express an expanded set of proteins that deal specifically with the hemicellulose content of the plant, including hemicellulose-targeted glycosidases and extracellular solute-binding proteins. Acting together, these two sub-systems work to break down the plant material and import the resulting sugars into the cell. The scientists went on to show that once inside the cell, the organism "switches on" certain enzymes involved in pentose metabolism in order to further process these hemicellulose-derived sugars into usable energy.

"By comparing how C. obsidiansis reacted to switchgrass, relative to pure cellulose, we were able to pinpoint the specific proteins and enzymes that are important to plant cell wall deconstructiona major roadblock to the production of advanced biofuels," Giannone said.

The team's measurement of the full complement and abundance of C. obsidiansis proteins, called proteomics, can now be combined with other technologies such as genomics, transcriptomics and metabolomics in order to obtain a 360-degree, system-wide view of the organism. Instead of studying discrete proteins, these systems biology-type approaches provide more thorough insight into the day-to-day operations of bioenergy-relevant organisms and thus better equip researchers to make recommendations about their use in ethanol production.

"One goal for us at the BioEnergy Science Center is to take these 'omic' technologies and integrate the data so we can draw definitive conclusions about a system," Giannone said.


Contact: Morgan McCorkle
DOE/Oak Ridge National Laboratory

Related biology news :

1. Book explores global implications of wildland fire smoke
2. Defying the disaster: Researcher explores resilient housing
3. Rice psychologist explores perception of fear in human sweat
4. Journal of General Physiology explores mysteries of TRP channels in latest Perspectives series
5. New book, Untangling the Double Helix, explores enzymes responsible for maintaining genome integrity
6. Woods Hole lecture series explores range of scientific topics
7. Research explores interactions between nanomaterials, biological systems
8. Study explores how life experiences contribute to the biological changes of Alzheimers
9. Study explores link between sunlight, multiple sclerosis
10. Virginia Tech researcher explores role of human behavior in infectious disease emergence
11. Ecological Society of America explores global warming at its 95th Annual Meeting
Post Your Comments:
(Date:10/29/2015)... Oct. 29, 2015  The J. Craig Venter Institute ... "DNA Synthesis and Biosecurity: Lessons Learned and Options for ... Health and Human Services guidance for synthetic biology providers ... --> --> Synthetic ... the potential to pose unique biosecurity threats. It now ...
(Date:10/29/2015)... health pioneer, Joseph C. Kvedar , MD, describes ... wellness, and the business opportunities that arise from it ... Healthy Things . Long before health and wellness ... vice president, Connected Health, Partners HealthCare, was creating a ... the hospital or doctor,s office into the day-to-day lives ...
(Date:10/27/2015)... -- In the present market scenario, security is one ... verticals such as banking, healthcare, defense, electronic gadgets, and ... secure & simplified access control and growing rate of ... bank accounts, misuse of users, , and so on. ... and smartphones are expected to provide potential opportunities for ...
Breaking Biology News(10 mins):
(Date:11/25/2015)... , Nov. 25, 2015 /PRNewswire/ - Aeterna Zentaris Inc. ... its business and prospects remain fundamentally strong and ... (zoptarelin doxorubicin) recently received DSMB recommendation to continue ... following review of the final interim efficacy and ... Primary Endpoint in men with heavily pretreated castration- ...
(Date:11/25/2015)... ... November 25, 2015 , ... Jessica Richman and Zachary Apte, ... their initial angel funding process. Now, they are paying it forward to other ... stage investments in the microbiome space. In this, they join other successful ...
(Date:11/24/2015)... SAN DIEGO , Nov. 24, 2015 Halozyme Therapeutics, ... Jaffray Healthcare Conference in New York on ... Dr. Helen Torley , president and CEO, will provide a ... New York at 1:00 p.m. ET/10:00 a.m. ... communication and investor relations, will provide a corporate overview. --> ...
(Date:11/24/2015)... 24, 2015 /PRNewswire/ - Aeterna Zentaris Inc. (NASDAQ:  AEZS) (TSX: ... behalf of the Toronto Stock Exchange, confirms that as ... no corporate developments that would cause the recent movements ... --> About Aeterna Zentaris Inc. ... --> Aeterna Zentaris is a specialty biopharmaceutical company ...
Breaking Biology Technology: