Navigation Links
New tool developed for DNA research
Date:4/6/2010

Luminescent markers are an indispensable tool for researchers working with DNA. But the markers are troublesome. Some tend to destroy the function and structure of DNA when inserted. Others emit so little light, that they can barely be detected in the hereditary material. So researchers have been asking for alternative markers.

Now a PhD student at the University of Copenhagen has developed a tool in collaboration with researchers at Chalmers Technical University, which might save both problems: A tool that you might call a molecular gauge.

PhD student Soren Preus has investigated the properties of the two luminescent so called DNA base analogues tCO and tCnitro trying to determine whether they could measure the structure of DNA without disrupting it. His scrutiny has shown that the function of DNA is unimpeded by the insertion of the molecular gauge. And even better: One base analogue is very efficient at emitting light, and the other very good at receiving it. And because you can provoke transport of light-energy between the two luminescent markers they are usable for a measuring technique known as FRET or Fluorescence Resonance Energy Transfer.

In brief FRET measurements are performed by forcing two luminescent markers to transfer light-energy from one to the other, and then measuring the efficiency of the transfer.

The two different markers are placed in the DNA-helix. When they are subjected to a lightpulse one marker (tCO) emits part of the energy to the other (tCnitro). This energy transfer can be measured. And by calculating backwards it is possible obtain very exact information about the distance and angle that the two have relative to one another.

Knowing distance and angle of the markers allows for calculations of distance and angle of all the natural base pairs in the DNA structure. And with that the researcher can put together a picture showing every twist and turn of the structure. Because structure and function are closely related in DNA, the method holds the potential to reveal new insights into the workings of DNA.

FRET-measurements are not a new phenomenon. What's new is, that Soren Preus has developed one of the base analogues tCnitro in collaboration with Swedish research institution Chalmers University of Technology. But even more important is the fact, that Mr Preus has used the facilities of the Molecular Engineering Group at University of Copenhagen to analyse every aspect of the energy-transfer between the two markers, because this allows future DNA-researchers to translate measurements to structure.

Mr. Preus hopes that the new tool might find its use in characterising the structural changes that take place when a protein binds to DNA or RNA as that could explain basic cellular mechanisms. But equally important: The molecular gauge can be used to examine exactly how new drugs work, when they bind to DNA or RNA.


'/>"/>

Contact: Jes Andersen
jean@science.ku.dk
453-050-6582
University of Copenhagen
Source:Eurekalert

Related biology news :

1. UC-developed technology to assist research and genetic drug delivery
2. Novel antitoxin strategy developed using tagged binding agents
3. Yale-developed test can help predict and diagnose preeclampsia
4. No muss, no fuss miniaturized analysis for complex samples developed
5. Early life on Earth may have developed more quickly than thought
6. Ben-Gurion University of the Negev technology being developed for use in Jordan desalination plant
7. Silicon with afterburners: Process developed at Rice could be boon to electronics manufacturer
8. Skin-like tissue developed from human embryonic stem cells
9. Improved method developed to test carcinogen risk
10. Brain-computer interface, developed at Brown, begins new clinical trial
11. Next-generation software system for flood warning and risk analysis to be developed
Post Your Comments:
*Name:
*Comment:
*Email:
(Date:5/16/2017)...  Veratad Technologies, LLC ( www.veratad.com ), an innovative ... verification solutions, announced today they will participate as a ... thru May 17, 2017, in Washington D.C.,s ... Identity impacts the lives of billions ... evolving digital world, defining identity is critical to nearly ...
(Date:4/19/2017)... ALBANY, New York , April 19, 2017 /PRNewswire/ ... highly competitive, as its vendor landscape is marked by ... in the market is however held by five major ... and Safran. Together these companies accounted for nearly 61% ... majority of the leading companies in the global military ...
(Date:4/13/2017)... According to a new market research report "Consumer IAM Market ... Authorization), Service, Authentication Type, Deployment Mode, Vertical, and Region - Global Forecast ... from USD 14.30 Billion in 2017 to USD 31.75 Billion by 2022, ... ... MarketsandMarkets Logo ...
Breaking Biology News(10 mins):
(Date:5/21/2017)... ... 20, 2017 , ... CNSDose is a genetically driven, clinically ... by finding the right antidepressant faster. CNSDose speeds recovery and reduces side ... personalized approach to treatment. , A peer-reviewed and published, 12-week double-blind ...
(Date:5/18/2017)... ... May 18, 2017 , ... ... Tapas Cooking Challenge is a two-hour team-building package designed for groups of 10-30 ... Chef Jodi Abel, which include items, such as Blackened Shrimp with Edamame Salad, ...
(Date:5/18/2017)... ... May 17, 2017 , ... Cognition Corporation ... has just released version 9.0 of the Cognition Cockpit platform. , “Our whole ... says David Cronin, CEO of Cognition. “We’re thrilled to finally be able to ...
(Date:5/18/2017)... Mass. (PRWEB) , ... May 17, 2017 , ... ... bias. Women, for example, are more likely to develop Alzheimer’s disease, while men ... that may account for this gender-specific neuronal bias is the aim of a ...
Breaking Biology Technology: