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Genome analysis of marine microbe reveals a metabolic minimalist
Date:2/21/2010

SANTA CRUZ, CA--Flightless birds, blind cave shrimp, and other oddities suggest a "use it or lose it" tendency in evolution. In the microbial world, an unusual marine microorganism appears to have ditched several major metabolic pathways, leaving it with a remarkably reduced set of genes.

This metabolic minimalist is a specialist uniquely suited to performing one very important function: taking nitrogen gas from the atmosphere and "fixing" it into a form that makes this essential nutrient available to other organisms. Nitrogen fixation fertilizes the oceans, controlling overall biological productivity and thereby affecting how much carbon dioxide the oceans absorb from the atmosphere.

Jonathan Zehr, the marine microbiologist who discovered the microbe, said it has stubbornly resisted efforts to grow it in the laboratory. But that hasn't stopped his team from determining the complete DNA sequence of its genome. Genome analysis enabled the researchers to reconstruct the organism's unusual metabolic lifestyle. They published their findings in Nature in a paper available online February 21.

Zehr, a professor of ocean sciences at the University of California, Santa Cruz, characterized the microbe as an atypical member of the cyanobacteria, a group of photosynthetic bacteria formerly known as blue-green algae. Still lacking a formal taxonomic classification, it is known only as UCYN-A. First detected in the open ocean near Hawaii in 1998, it is now known to be periodically abundant in tropical and subtropical waters throughout the world.

"Biogeochemists have never been able to balance the nitrogen budget of the oceans--there seems to be more nitrogen produced than we can account for from known organisms. So this organism may be an important part of the overall nitrogen budget," Zehr said.

In a 2008 paper in Science, Zehr's team reported that UCYN-A is completely lacking the genes for a key component o
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Contact: Tim Stephens
stephens@ucsc.edu
831-459-2495
University of California - Santa Cruz
Source:Eurekalert

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