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Building artificial cells will be a noisy business
Date:2/24/2014

Engineers like to make things that work. And if one wants to make something work using nanoscale componentsthe size of proteins, antibodies, and virusesmimicking the behavior of cells is a good place to start since cells carry an enormous amount of information in a very tiny packet. As Erik Winfree, professor of computer science, computation and neutral systems, and bioengineering, explains, "I tend to think of cells as really small robots. Biology has programmed natural cells, but now engineers are starting to think about how we can program artificial cells. We want to program something about a micron in size, finer than the dimension of a human hair, that can interact with its chemical environment and carry out the spectrum of tasks that biological things do, but according to our instructions."

Getting tiny things to behave is, however, a daunting task. A central problem bioengineers face when working at this scale is that when biochemical circuits, such as the one Winfree has designed, are restricted to an extremely small volume, they may cease to function as expected, even though the circuit works well in a regular test tube. Smaller populations of molecules simply do not behave the same as larger populations of the same molecules, as a recent paper in Nature Chemistry demonstrates.

Winfree and his coauthors began their investigation of the effect of small sample size on biochemical processes with a biochemical oscillator designed in Winfree's lab at Caltech. This oscillator is a solution composed of small synthetic DNA molecules that are activated by RNA transcripts and enzymes. When the DNA molecules are activated by the other components in the solution, a biological circuit is created. This circuit fluoresces in a rhythmic pulse for approximately 15 hours until its chemical reactions slow and eventually stop.

The researchers then "compartmentalized" the oscillator by reducing it from one large system in a test tube to ma
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Contact: Deborah Williams-Hedges
mr@caltech.edu
California Institute of Technology
Source:Eurekalert

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