Navigation Links
Amber MD Workshop 2011 -- May 3-6, Barcelona
Date:3/23/2011

We are glad to announce the Amber Workshop 2011 that will be held in Barcelona from the 3rd to 6th May. The course will be taught by Ross C. Walker and Adrian E. Roitberg and will be hosted by the IRB Barcelona and the Barcelona supercomputing Center.

Program

Classes will be held from Tuesday 3rd to Friday 6th of May, starting at 9:00 AM to 6:00 PM, with breaks for lunch and coffee.

List of covered topics:

  1. Introduction to force fields and molecular dynamics (Lecture)
  2. Overview of AMBER and it's programs (Lecture)
  3. Introduction to setting up and running simulations (Lecture / Hands on)
  4. Visualizing AMBER simulations (Hands on)
  5. Overview of AMBER Force Fiels / Solvent Models etc. (Lecture)
  6. Introduction to implicit solvent and binding energy calculations (Lecture)
  7. Protein folding and advanced analysis (Hands on)
  8. Simulating Sugars and the Glycam Force Field (Lecture / Hands on)
  9. Designing good simulation projects (Lecture)
  10. Dealing with non-standard residues (Lecture / Hands on)
  11. What to do if there is no crystal structure (Lecture)
  12. Statistical mechanics for free energy calculations [Thermodynamic Integration] (Lecture / Hands on)
  13. QM/MM coupled potential simulations (Lecture)
  14. GPU accelerated MD (Lecture)

Attendees

Attendees consist of Graduate students and postdocs as well as few faculty members interested in learning about Molecular Dynamics techniques.

The number is limited by the availability of hardware for the hands-on tutorials.

These require each student to have access to a desktop running Linux. Student number is limited to 40.

Registration

Given the limited number of seats you will be requested to fill a pre-registration form before the 1st of April: http://mmb.irbbarcelona.org/amber2011/regis.htm

Registration fee is 90 Euros and includes:

  • USB flash drive with training materials
  • Temporal access to remote computing resources
  • Coffee breaks
  • Certificate of attendance


'/>"/>

Contact: Meritxell Gavalda
meritxell.gavalda@irbbarcelona.org
Institute for Research in Biomedicine (IRB Barcelona)
Source:Eurekalert

Related biology news :

1. Mating mites trapped in amber reveal sex role reversal
2. LiXEdrom: Innovative measuring chamber for X-ray study of liquid jets
3. International team of scientists describe first Cretaceous African amber deposit
4. Concordia University to build innovative Environmental Chamber
5. Diuscovery in amber reveals ancient biology of termites
6. Ecology of microbes focus of workshop
7. Wasting disease in cattle focus of workshop
8. IEEE-USA workshop to explore the challenges and opportunities of electric vehicle technology
9. Malaria modeling and control focus of workshop
10. Body weight regulation and metabolism focus of workshop
11. STEM workshop set to advance women, minorities
Post Your Comments:
*Name:
*Comment:
*Email:
(Date:6/22/2016)... , June 22, 2016   Acuant ... and verification solutions, has partnered with RightCrowd ... solutions for Visitor Management, Self-Service Kiosks and ... products that add functional enhancements to existing ... corporations and venues with an automated ID ...
(Date:6/15/2016)... June 15, 2016 Transparency ... titled "Gesture Recognition Market by Application Market - Global Industry Analysis ... 2024". According to the report, the  global gesture recognition ... 2015 and is estimated to grow at a ... by 2024.  Increasing application of gesture ...
(Date:6/2/2016)... , June 2, 2016 The ... has awarded the 44 million US Dollar project, for ... Embossed Vehicle Plates including Personalization, Enrolment, and IT Infrastructure ... leader in the production and implementation of Identity Management Solutions. ... January, however Decatur was selected for ...
Breaking Biology News(10 mins):
(Date:6/27/2016)... ... 2016 , ... Parallel 6 , the leading software as a service ... Virtual Patient Encounter CONSULT module which enables both audio and video telemedicine communication ... , Using the CONSULT module, patients and physicians can schedule a face to face ...
(Date:6/27/2016)... , ... June 27, 2016 , ... ... for Amgen, will join the faculty of the University of North Carolina ... professor of strategy and entrepreneurship at UNC Kenan-Flagler, with a focus on the ...
(Date:6/27/2016)... June 27, 2016   Ginkgo Bioworks , a ... engineering, was today awarded as one of the ... the world,s most innovative companies. Ginkgo Bioworks is ... the real world in the nutrition, health and ... directly with customers including Fortune 500 companies to ...
(Date:6/24/2016)... SAN DIEGO , June 24, 2016 /PRNewswire/ ... that more sensitively detects cancers susceptible to PARP ... individual circulating tumor cells (CTCs). The new test ... of HRD-targeted therapeutics in multiple cancer types. ... therapies targeting DNA damage response pathways, including PARP, ...
Breaking Biology Technology: